Evidence map›Paper›PMID 25845845›Full record

ArticleJournal of bacteriology2015

Resources for Genetic and Genomic Analysis of Emerging Pathogen Acinetobacter baumannii.

Larry A Gallagher, Elizabeth Ramage, Eli J Weiss, Matthew Radey, Hillary S Hayden, Kiara G Held, Holly K Huse, Daniel V Zurawski, Mitchell J Brittnacher, Colin Manoil

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 206 papers.

0numbers the graph read from it
0cells of the map it votes in
206citing papers in PubMed
6.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

206 citing papers in PubMed, 303 citations in OpenAlex.

  1. Loss of CsrA inProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. A surface-exposed cardiolipin synthase provides an unexpected paradigm for maintaining the Gram-negative outer membrane.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article

146 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Larry A GallagherDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA lg@u.washington.edu manoil@u.washington.edu.
Elizabeth RamageDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Eli J WeissDepartment of Microbiology, University of Washington, Seattle, Washington, USA.
Matthew RadeyDepartment of Microbiology, University of Washington, Seattle, Washington, USA.
Hillary S HaydenDepartment of Microbiology, University of Washington, Seattle, Washington, USA.
Kiara G HeldDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Holly K HuseDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Daniel V ZurawskiDepartment of Wound Infections, Walter Reed Army Institute of Research, Silver Spring, Maryland, USA.
Mitchell J BrittnacherDepartment of Microbiology, University of Washington, Seattle, Washington, USA.
Colin ManoilDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
University of Washington · USWalter Reed Army Institute of Research · US

Funding

Variation in Human Innate ImmunityU54AI057141 · NIAID · UNIVERSITY OF WASHINGTON · PI COOKSON, BRAD T · 2003 to 2013
$102.3M
Translational Research Center to Expedite Novel Therapies in Cystic FibrosisP30DK089507 · NIDDK · SEATTLE CHILDREN'S HOSPITAL · PI Christopher Hooper Goss, Lucas R Hoffman · 2010 to 2026
$21.4M
Protein Interaction Technology CoreU19AI107775 · NIAID · UNIVERSITY OF WASHINGTON · PI BRITTNACHER, MITCHELL J · 2013 to 2017
$7.7M
NIAID NIH HHS U19 AI107775NIAID NIH HHS U19AI107775NIAID NIH HHS U54 AI057141NIAID NIH HHS U54AI057141NIDDK NIH HHS P30 DK089507
6 · The paper itself

Abstract

unlabelledAcinetobacter baumannii is a Gram-negative bacterial pathogen notorious for causing serious nosocomial infections that resist antibiotic therapy. Research to identify factors responsible for the pathogen's success has been limited by the resources available for genome-scale experimental studies. This report describes the development of several such resources for A. baumannii strain AB5075, a recently characterized wound isolate that is multidrug resistant and displays robust virulence in animal models. We report the completion and annotation of the genome sequence, the construction of a comprehensive ordered transposon mutant library, the extension of high-coverage transposon mutant pool sequencing (Tn-seq) to the strain, and the identification of the genes essential for growth on nutrient-rich agar. These resources should facilitate large-scale genetic analysis of virulence, resistance, and other clinically relevant traits that make A. baumannii a formidable public health threat. IMPORTANCE: Acinetobacter baumannii is one of six bacterial pathogens primarily responsible for antibiotic-resistant infections that have become the scourge of health care facilities worldwide. Eliminating such infections requires a deeper understanding of the factors that enable the pathogen to persist in hospital environments, establish infections, and resist antibiotics. We present a set of resources that should accelerate genome-scale genetic characterization of these traits for a reference isolate of A. baumannii that is highly virulent and representative of current outbreak strains.

Indexed as

Genome, BacterialAcinetobacter baumanniiAcinetobacter InfectionsCommunicable Diseases, EmergingDNA, BacterialDNA Transposable ElementsGene LibraryHumansMutationPlasmidsDNA, BacterialDNA Transposable Elements

Identifiers

PMID25845845
PMCPMC4438207
OpenAlexW2108447963

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.