Evidence map›Paper›PMID 25845601›Full record

ArticleNucleic acids research2015

Gadd45a promotes DNA demethylation through TDG.

Zheng Li, Tian-Peng Gu, Alain R Weber, Jia-Zhen Shen, Bin-Zhong Li, Zhi-Guo Xie, Ruichuan Yin, Fan Guo, Xiaomeng Liu, Fuchou Tang and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 99 citations in OpenAlex.

  1. Article
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  6. Review
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  11. Review
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  13. Levels of base excision repair proteins in CD4Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2022
    Article
  14. New Insights into TETs in Psychiatric Disorders.International journal of molecular sciences · 2022
    Review
  15. Review
  16. Gadd45 Proteins in Immunity 2.0.Advances in experimental medicine and biology · 2022
    Article
  17. Gadd45 in DNA Demethylation and DNA Repair.Advances in experimental medicine and biology · 2022
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Zheng LiGroup of DNA Metabolism, The State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, Shanghai 200031, China.
Tian-Peng GuGroup of DNA Metabolism, The State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, Shanghai 200031, China.
Alain R WeberDepartment of Biomedicine, University of Basel, Basel 4048, Switzerland.
Jia-Zhen ShenGroup of DNA Metabolism, The State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, Shanghai 200031, China.
Bin-Zhong LiGroup of DNA Metabolism, The State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, Shanghai 200031, China.
Zhi-Guo XieGroup of DNA Metabolism, The State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, Shanghai 200031, China.
Ruichuan YinThe State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China.
Fan GuoBiodynamic Optical Imaging Center, College of Life Sciences, Peking University, Beijing 100871, China.
Xiaomeng LiuBiodynamic Optical Imaging Center, College of Life Sciences, Peking University, Beijing 100871, China.
Fuchou TangBiodynamic Optical Imaging Center, College of Life Sciences, Peking University, Beijing 100871, China Ministry of Education Key Laboratory of Cell Proliferation and Differentiation, Peking University, Beijing 100871, China.
Hailin WangThe State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China.
Primo SchärDepartment of Biomedicine, University of Basel, Basel 4048, Switzerland.
Guo-Liang XuGroup of DNA Metabolism, The State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, Shanghai 200031, China School of Life Science and Technology, ShanghaiTech University, 319 Yue Yang Road, Shanghai 200031, China glxu@sibcb.ac.cn.
Chinese Academy of Sciences · CNCenter for Excellence in Molecular Cell Science · CNPeking University · CNUniversity of Basel · CHMRC Laboratory of Molecular Biology · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Growth arrest and DNA-damage-inducible protein 45 (Gadd45) family members have been implicated in DNA demethylation in vertebrates. However, it remained unclear how they contribute to the demethylation process. Here, we demonstrate that Gadd45a promotes active DNA demethylation through thymine DNA glycosylase (TDG) which has recently been shown to excise 5-formylcytosine (5fC) and 5-carboxylcytosine (5caC) generated in Ten-eleven-translocation (Tet)-initiated oxidative demethylation. The connection of Gadd45a with oxidative demethylation is evidenced by the enhanced activation of a methylated reporter gene in HEK293T cells expressing Gadd45a in combination with catalytically active TDG and Tet. Gadd45a interacts with TDG physically and increases the removal of 5fC and 5caC from genomic and transfected plasmid DNA by TDG. Knockout of both Gadd45a and Gadd45b from mouse ES cells leads to hypermethylation of specific genomic loci most of which are also targets of TDG and show 5fC enrichment in TDG-deficient cells. These observations indicate that the demethylation effect of Gadd45a is mediated by TDG activity. This finding thus unites Gadd45a with the recently defined Tet-initiated demethylation pathway.

Indexed as

AnimalsCell Cycle ProteinsCytosineDioxygenasesDNA-Binding ProteinsDNA MethylationEmbryonic Stem CellsGADD45 ProteinsHEK293 CellsHumansMice, KnockoutNuclear ProteinsProto-Oncogene ProteinsThymine DNA GlycosylaseTranscriptional Activation5-carboxylcytosine5-formylcytosineCell Cycle ProteinsCytosineDioxygenasesDNA-Binding ProteinsGadd45a protein, mouseGADD45 ProteinsNuclear ProteinsProto-Oncogene ProteinsTET2 protein, humanThymine DNA Glycosylase

Identifiers

PMID25845601
PMCPMC4417182
OpenAlexW1969206496

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.