Evidence map›Paper›PMID 25843052›Full record

ArticleClinical oral investigations2015

DNA methylation analysis of SOCS1, SOCS3, and LINE-1 in microdissected gingival tissue.

Denise C Andia, Aline C Planello, Danielle Portinho, Rodrigo A da Silva, Cristiane R Salmon, Enilson A Sallum, Francisco H Nociti Junior, Ana P de Souza

Abstract read
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In one paragraph

Article in Clinical oral investigations, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Inhibitors of DNA methylation support TGF-β1-inducedJournal of periodontal & implant science · 2017
    Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Denise C AndiaDepartment of Morphology, Division of Histology, School of Dentistry at Piracicaba, University of Campinas, Av. Limeira 901, 13414-018, Piracicaba, São Paulo-SP, Brazil. denise@andia.com.br.
Aline C PlanelloDepartment of Morphology, Division of Histology, School of Dentistry at Piracicaba, University of Campinas, Av. Limeira 901, 13414-018, Piracicaba, São Paulo-SP, Brazil.
Danielle PortinhoDepartment of Morphology, Division of Histology, School of Dentistry at Piracicaba, University of Campinas, Av. Limeira 901, 13414-018, Piracicaba, São Paulo-SP, Brazil.
Rodrigo A da SilvaDepartment of Morphology, Division of Histology, School of Dentistry at Piracicaba, University of Campinas, Av. Limeira 901, 13414-018, Piracicaba, São Paulo-SP, Brazil.
Cristiane R SalmonDepartment of Prosthodontics and Periodontics, Division of Periodontics, School of Dentistry at Piracicaba, University of Campinas, Piracicaba, São Paulo-SP, Brazil.
Enilson A SallumDepartment of Prosthodontics and Periodontics, Division of Periodontics, School of Dentistry at Piracicaba, University of Campinas, Piracicaba, São Paulo-SP, Brazil.
Francisco H Nociti JuniorDepartment of Prosthodontics and Periodontics, Division of Periodontics, School of Dentistry at Piracicaba, University of Campinas, Piracicaba, São Paulo-SP, Brazil.
Ana P de SouzaDepartment of Morphology, Division of Histology, School of Dentistry at Piracicaba, University of Campinas, Av. Limeira 901, 13414-018, Piracicaba, São Paulo-SP, Brazil.
Universidade Estadual de Campinas (UNICAMP) · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesDNA methylation plays a critical role in the regulation of the transcription of the suppressors of cytokine signaling (SOCS) 1 and SOCS3, which are modulators in the inflammation. We hypothesized that the methylation status of SOCS1, SOCS3, and long interspersed nuclear element (LINE)-1 in gingival tissues previously inflamed would be similar to that found in gingival tissues without clinical inflammation in the period studied. MATERIALS AND

methodsLaser capture microdissection was performed to isolate epithelial and connective gingival tissues. The groups were comprised by ten patients without history of periodontitis and absence of clinical signs of inflammation in the gingiva during the study (healthy group) and ten patients with history of periodontitis, presenting inflammation in the gingival tissue at the first examination of the study (controlled chronic periodontitis group). The gingival biopsies from the controlled chronic periodontitis group were collected after controlling the inflammation. DNA methylation patterns were analyzed using methylation-specific high-resolution melting and combined bisulfite restriction analysis.

resultsDNA methylation levels for SOCS1 and SOCS3 did not differ between groups or tissues; likewise, no differences were observed in total LINE-1 methylation or at specific loci.

conclusionAt 3 months following control of inflammation in gingival tissues, the methylation profile of SOCS1, SOCS3, and LINE-1 is similar between connective and epithelial tissues from patients that were previously affected or not by chronic inflammation. CLINICAL RELEVANCE: Clinical results of a successful treatment are observed after inflammation control and the molecular findings illustrate local and general methylation patterns in recovering tissues toward health conditions and might help to understand events that are occurring in oral cells.

Indexed as

DNA MethylationBiopsyBrazilDeoxyribonuclease IFemaleGingivaHumansMaleMiddle AgedPeriodontitisSuppressor of Cytokine Signaling 1 ProteinSuppressor of Cytokine Signaling 3 ProteinDeoxyribonuclease ILINE-1 endonuclease, humanSOCS1 protein, humanSOCS3 protein, humanSuppressor of Cytokine Signaling 1 ProteinSuppressor of Cytokine Signaling 3 ProteinDNA methylationInflammationLong interspersed nuclear elementsSuppressor of cytokine Signaling proteins

Identifiers

PMID25843052
OpenAlexW2037773648

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.