Evidence map›Paper›PMID 25840420›Full record

ArticleOncotarget2015

Polymorphism in one-carbon metabolism pathway affects survival of gastric cancer patients: Large and comprehensive study.

Tingting Zhao, Dongying Gu, Zhi Xu, Xinying Huo, Lili Shen, Chun Wang, Yongfei Tang, Peng Wu, Jason He, Weida Gong and 2 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Tingting ZhaoDepartment of Oncology, Nanjing First Hospital, Nanjing Medical University, Nanjing, China.
Dongying GuDepartment of Oncology, Nanjing First Hospital, Nanjing Medical University, Nanjing, China.
Zhi XuDepartment of Oncology, Nanjing First Hospital, Nanjing Medical University, Nanjing, China.
Xinying HuoDepartment of Oncology, Nanjing First Hospital, Nanjing Medical University, Nanjing, China.
Lili ShenDepartment of Oncology, Nanjing First Hospital, Nanjing Medical University, Nanjing, China.
Chun WangDepartment of Oncology, Nanjing First Hospital, Nanjing Medical University, Nanjing, China.
Yongfei TangDepartment of Surgery, Yixing People's Hospital, Yixing, China.
Peng WuDepartment of Oncology, Nanjing First Hospital, Nanjing Medical University, Nanjing, China.
Jason HeCollege of Letters and Science, University of California at Berkeley, CA, USA.
Weida GongDepartment of Surgery, Yixing Cancer Hospital, Yixing, China.
Ming-Liang HeDepartment of Biomedical Sciences, City University of Hong Kong, Hong Kong, China.
Jinfei ChenDepartment of Oncology, Nanjing First Hospital, Nanjing Medical University, Nanjing, China.
Nanjing Medical University · CNCity University of Hong Kong · HKJiangsu University · CNYixing Tumor Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although it has been shown that polymorphisms in one-carbon metabolism (OCM) pathway are associated with gastric cancer (GC), their interactions and contributions for patients' survival are elusive. In this study, we investigated the effects of polymorphisms and their interactions on the survival of GC patients, including genes of Methylenetetrahydrofolate reductase (MTHFR 677C > T, 1298A > C), Methionine synthase reductase (MTRR 66A > G), Methionine synthase (MTR 2756A > G), and Thymidylate synthase (TS 3'-UTR ins6 > del6, 5'-UTR 2R > 3R). We recruited 919 GC patients from 1998 to 2006. The Kaplan-Meier plots, Cox regression analyses and the log-rank tests were carried out in this study. MTHFR 1298CC genotype showed protective effect (HR = 0.444, 95% CI = 0.210-0.940). MTRR 66 GA + GG genotypes decreased the risk of death (HR = 0.793, 95% CI = 0.651-0.967) in general, and in subgroups with more pronounced diffuse type, greater depth of invasion (T2/T3/T4), higher level lymph node metastasis (N1/N2/N3), advanced TNM stages (II/III level) and 5-Fu treatment. However, the improved survival disappeared when GC patients simultaneously had MTR 2756 GA + GG genotypes (HR = 1.063, 95% CI = 0.750-1.507). Although MTRR 66GA genotype was not associated with the survival of GC patients, patients with simultaneous MTRR 66GA and MTR 2756AA genotypes exhibited significant risk reduction of death (HR = 0.773, 95% CI = 0.609-0.981). MTHFR 1298 CA + CC combined with TS 5-UTR 2R3R + 3R3R genotypes (HR = 0.536, 95% CI = 0.315-0.913) also increased patient survival rates. Our results suggest that the MTRR 66A > G and MTHFR 1298A > C polymorphisms may be useful prognostic biomarkers for GC patients.

Indexed as

Polymorphism, Genetic5-Methyltetrahydrofolate-Homocysteine S-Methyltransferase5' Untranslated RegionsAdultAgedAged, 80 and overCarcinomaFemaleFerredoxin-NADP ReductaseGenetic Predisposition to DiseaseGenotypeHumansKaplan-Meier EstimateLymphatic MetastasisMaleMethylenetetrahydrofolate Reductase (NADPH2)5-Methyltetrahydrofolate-Homocysteine S-Methyltransferase5' Untranslated RegionsFerredoxin-NADP Reductasemethionine synthase reductaseMethylenetetrahydrofolate Reductase (NADPH2)Neoplasm ProteinsOne-Carbon Group TransferasesThymidylate Synthasegastric cancerone-carbon metabolism (OCM)single nucleotide polymorphism (SNP)

Identifiers

PMID25840420
PMCPMC4496239
OpenAlexW1500124342

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.