Evidence map›Paper›PMID 25839329›Full record

ArticleAmerican journal of human genetics2015

De novo mutations in SIK1 cause a spectrum of developmental epilepsies.

Jeanne Hansen, Chelsi Snow, Emily Tuttle, Dalia H Ghoneim, Chun-Song Yang, Adam Spencer, Sonya A Gunter, Christopher D Smyser, Christina A Gurnett, Marwan Shinawi and 6 more

Erratum issuedOpen access · bronzeAbstract readCase Reports
In one paragraph

Article in American journal of human genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 59 citations in OpenAlex.

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  12. Impact of genome build on RNA-seq interpretation and diagnostics.medRxiv : the preprint server for health sciences · 2024
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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Jeanne HansenCenter for Neural Development and Disease, University of Rochester Medical Center, Rochester, NY 14642, USA.
Chelsi SnowCenter for Cell Signaling, University of Virginia, Charlottesville, VA 22908, USA.
Emily TuttleCenter for Neural Development and Disease, University of Rochester Medical Center, Rochester, NY 14642, USA.
Dalia H GhoneimCenter for Neural Development and Disease, University of Rochester Medical Center, Rochester, NY 14642, USA.
Chun-Song YangCenter for Cell Signaling, University of Virginia, Charlottesville, VA 22908, USA.
Adam SpencerCenter for Cell Signaling, University of Virginia, Charlottesville, VA 22908, USA.
Sonya A GunterDepartment of Neurology, University of Virginia, Charlottesville, VA 22908, USA.
Christopher D SmyserDepartment of Neurology, Washington University, St. Louis, MO 63110, USA.
Christina A GurnettDepartment of Neurology, Washington University, St. Louis, MO 63110, USA.
Marwan ShinawiDepartment of Pediatrics, Division of Genetics and Genomic Medicine, Washington University, St. Louis, MO 63110, USA.
William B DobynsDepartment of Neurology and Division of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, WA 98195, USA; Center for Integrative Brain Research, Seattle Research Institute, Seattle, WA 98105, USA.
James WhelessLeBonheur Children's Hospital and the University of Tennessee, Memphis, TN 38103, USA.
Marc W HaltermanCenter for Neural Development and Disease, University of Rochester Medical Center, Rochester, NY 14642, USA; Department of Neurology, University of Rochester Medical Center, Rochester, NY 14642, USA.
Laura A JansenDepartment of Neurology, University of Virginia, Charlottesville, VA 22908, USA.
Bryce M PaschalCenter for Cell Signaling, University of Virginia, Charlottesville, VA 22908, USA; Departments of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908, USA.
Alex R PaciorkowskiCenter for Neural Development and Disease, University of Rochester Medical Center, Rochester, NY 14642, USA; Department of Neurology, University of Rochester Medical Center, Rochester, NY 14642, USA; Departments of Pediatrics and Biomedical Genetics, University of Rochester Medical Center, Rochester, NY 14642, USA. Electronic address: alex_paciorkowski@urmc.rochester.edu.
University of Virginia · USUniversity of Rochester Medical Center · USWashington University in St. Louis · USBehavioral Tech Research, Inc. · USLe Bonheur Children's Hospital · US

Funding

Washington University Institute of Clinical and Translational SciencesUL1TR000448 · NCATS · WASHINGTON UNIVERSITY · PI EVANOFF, BRADLEY A · 2012 to 2016
$41.4M
TRAINING IN CELL AND MOLECULAR BIOLOGYT32GM008136 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI STUKENBERG, P. TODD · 1985 to 2020
$8.5M
NEUROLOGICAL SCIENCES ACADEMIC DEVELOPMENT AWARD(INST)K12NS001690 · NINDS · WASHINGTON UNIVERSITY · PI WONG, MICHAEL · 1993 to 2018
$5.2M
The Role of ARX in Normal and Abnormal Brain DevelopmentR01NS046616 · NINDS · CHILDREN'S HOSP OF PHILADELPHIA · PI GOLDEN, JEFFREY A · 2005 to 2013
$4.1M
Targeting phosphatase regulated cleavage of HIF-1-alpha in ischemic brain injuryR01NS076617 · NINDS · UNIVERSITY OF ROCHESTER · PI HALTERMAN, MARC W · 2011 to 2015
$1.6M
Regulation of nuclear transport in diseaseR01AG040162 · NIA · UNIVERSITY OF VIRGINIA · PI PASCHAL, BRYCE · 2012 to 2016
$1.6M
Biology of developmental encephalopathies presenting with infantile spasmsK08NS078054 · NINDS · UNIVERSITY OF ROCHESTER · PI PACIORKOWSKI, ALEXANDER R · 2013 to 2017
$779k
Early-Life Seizures and Development of GABAergic Inhibition in the Human BrainK02NS072162 · NINDS · UNIVERSITY OF VIRGINIA · PI JANSEN, LAURA A · 2011 to 2013
$581k
NCATS NIH HHS UL1 TR000448NIA NIH HHS R01 AG040162NIA NIH HHS R01AG040162NIGMS NIH HHS T32 GM008136NINDS NIH HHS K02 NS072162NINDS NIH HHS K02NS072162NINDS NIH HHS K08 NS078054NINDS NIH HHS K08NS078054NINDS NIH HHS R01 NS046616NINDS NIH HHS R01NS046616NINDS NIH HHS R01 NS076617NINDS NIH HHS R01NS076617
6 · The paper itself

Abstract

Developmental epilepsies are age-dependent seizure disorders for which genetic causes have been increasingly identified. Here we report six unrelated individuals with mutations in salt-inducible kinase 1 (SIK1) in a series of 101 persons with early myoclonic encephalopathy, Ohtahara syndrome, and infantile spasms. Individuals with SIK1 mutations had short survival in cases with neonatal epilepsy onset, and an autism plus developmental syndrome after infantile spasms in others. All six mutations occurred outside the kinase domain of SIK1 and each of the mutants displayed autophosphorylation and kinase activity toward HDAC5. Three mutations generated truncated forms of SIK1 that were resistant to degradation and also showed changes in sub-cellular localization compared to wild-type SIK1. We also report the human neuropathologic examination of SIK1-related developmental epilepsy, with normal neuronal morphology and lamination but abnormal SIK1 protein cellular localization. Therefore, these results expand the genetic etiologies of developmental epilepsies by demonstrating SIK1 mutations as a cause of severe developmental epilepsy.

Indexed as

Age FactorsAutistic DisorderBase SequenceChildDNA PrimersElectroencephalographyHistone DeacetylasesHumansImmunohistochemistryInfantInfant, NewbornMagnetic Resonance ImagingMolecular Sequence DataMutationPhosphorylationPolymerase Chain ReactionDNA PrimersHDAC5 protein, humanHistone DeacetylasesProtein Serine-Threonine KinasesSIK1 protein, human

Identifiers

PMID25839329
PMCPMC4385182
OpenAlexW2025123864

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.