Evidence map›Paper›PMID 25838541›Full record

ArticleGenes & development2015

Trimethylation of Lys36 on H3 restricts gene expression change during aging and impacts life span.

Mintie Pu, Zhuoyu Ni, Minghui Wang, Xiujuan Wang, Jason G Wood, Stephen L Helfand, Haiyuan Yu, Siu Sylvia Lee

Abstract read
In one paragraph

Article in Genes & development, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed.

  1. Sex-Specific Associations between One-Carbon Metabolism Indices and Posttranslational Histone Modifications in Arsenic-Exposed Bangladeshi Adults.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2017
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  17. Lysine-36 ofbioRxiv : the preprint server for biology · 2023
    Article
  18. Vitamin BNature metabolism · 2023
    Article
  19. Review
  20. Review

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Mintie PuDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14850, USA;
Zhuoyu NiDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14850, USA;
Minghui WangComputational Biology Service Unit, Cornell University, Ithaca, New York 14850, USA;
Xiujuan WangDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14850, USA; Department of Biostatistics and Computational Biology, Weill Institute, Cornell University, Ithaca, New York 14850, USA;
Jason G WoodDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, Rhode Island 02912, USA.
Stephen L HelfandDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, Rhode Island 02912, USA.
Haiyuan YuDepartment of Biostatistics and Computational Biology, Weill Institute, Cornell University, Ithaca, New York 14850, USA;
Siu Sylvia LeeDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14850, USA; sylvia.lee@cornell.edu.

Funding

Systematic Analysis of C elegans Longevity DeterminantsR01AG024425 · NIA · CORNELL UNIVERSITY ITHACA · PI Siu Sylvia Lee · 2004 to 2026
$8.5M
Control of Gene Expression and Life SpanR01AG024353 · NIA · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HELFAND, STEPHEN L · 2004 to 2018
$5.5M
Single Gene Mutants that Confer Longevity in DrosphilaR37AG016667 · NIA · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HELFAND, STEPHEN L · 2004 to 2014
$3.8M
Control of Gene Expression and Life SpanRF1AG024353 · NIA · BROWN UNIVERSITY · PI HELFAND, STEPHEN L · 2019 to 2019
$2.5M
Whole Genome Sequencing to Discover Familial Myeloma Risk GenesR01CA167824 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI LIPKIN, STEVEN M, OFFIT, KENNETH · 2012 to 2016
$1.9M
Towards a comprehensive protein interactome network in Schizosaccharomyces pombeR01GM097358 · NIGMS · CORNELL UNIVERSITY · PI YU, HAIYUAN · 2012 to 2016
$1.7M
Using Protein Interactome Networks to Understand the Functional Role of Coding DNR01GM104424 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI LIPKIN, STEVEN M, YU, HAIYUAN · 2013 to 2016
$1.7M
Computational Methods for Unraveling Combinatorial Gene RegulationR01GM108716 · NIGMS · UNIVERSITY OF IOWA · PI TAN, KAI · 2014 to 2017
$1.2M
Investigate the Transcriptional Co-factors of DAF-16/FOXO in C. elegansR56AG024425 · NIA · CORNELL UNIVERSITY · PI LEE, SIU SYLVIA · 2009 to 2009
$383k
NCI NIH HHS R01 CA167824NIA NIH HHS R01 AG024425NIA NIH HHS R37 AG016667NIA NIH HHS R56 AG024425NIA NIH HHS RF1 AG024353NIGMS NIH HHS R01 GM097358NIGMS NIH HHS R01 GM104424NIGMS NIH HHS R01 GM108716
6 · The paper itself

Abstract

Functional data indicate that specific histone modification enzymes can be key to longevity in Caenorhabditis elegans, but the molecular basis of how chromatin structure modulates longevity is not well understood. In this study, we profiled the genome-wide pattern of trimethylation of Lys36 on histone 3 (H3K36me3) in the somatic cells of young and old Caenorhabditis elegans. We revealed a new role of H3K36me3 in maintaining gene expression stability through aging with important consequences on longevity. We found that genes with dramatic expression change during aging are marked with low or even undetectable levels of H3K36me3 in their gene bodies irrespective of their corresponding mRNA abundance. Interestingly, 3' untranslated region (UTR) length strongly correlates with H3K36me3 levels and age-dependent mRNA expression stability. A similar negative correlation between H3K36me3 marking and mRNA expression change during aging was also observed in Drosophila melanogaster, suggesting a conserved mechanism for H3K36me3 in suppressing age-dependent mRNA expression change. Importantly, inactivation of the methyltransferase met-1 resulted in a decrease in global H3K36me3 marks, an increase in mRNA expression change with age, and a shortened life span, suggesting a causative role of the H3K36me3 marking in modulating age-dependent gene expression stability and longevity.

Indexed as

AgingAnimalsCaenorhabditis elegansDrosophila melanogasterGene Expression RegulationHistonesLongevityLysineMethylationHistonesLysineagingepigeneticsgene expressionH3K36me3met-1

Identifiers

PMID25838541
PMCPMC4387714

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.