Evidence map›Paper›PMID 25837832›Full record

ArticleMarine biotechnology (New York, N.Y.)2015

The Pathogen of the Great Barrier Reef Sponge Rhopaloeides odorabile Is a New Strain of Pseudoalteromonas agarivorans Containing Abundant and Diverse Virulence-Related Genes.

Jayanta D Choudhury, Arnab Pramanik, Nicole S Webster, Lyndon E Llewellyn, Ratan Gachhui, Joydeep Mukherjee

Abstract read
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In one paragraph

Article in Marine biotechnology (New York, N.Y.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
8.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
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  5. Review
  6. Article
  7. Mass mortality of the keratose spongeFrontiers in microbiology · 2023
    Article
  8. Pathogens (Basel, Switzerland) · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. Genome Analysis of theCurrent issues in molecular biology · 2021
    Article
  13. Article
  14. Harnessing the sponge microbiome for industrial biocatalysts.Applied microbiology and biotechnology · 2020
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Jayanta D ChoudhurySchool of Environmental Studies, Jadavpur University, Kolkata, 700 032, India.
Arnab Pramanik
Nicole S Webster
Lyndon E Llewellyn
Ratan Gachhui
Joydeep Mukherjee
Jadavpur University · INAustralian Institute of Marine Science · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sponge diseases have increased dramatically, yet the causative agents of disease outbreaks have eluded identification. We undertook a polyphasic taxonomic analysis of the only confirmed sponge pathogen and identified it as a novel strain of Pseudoalteromonas agarivorans. 16S ribosomal RNA (rRNA) and gyraseB (gyrB) gene sequences along with phenotypic characteristics demonstrated that strain NW4327 was most closely related to P. agarivorans. DNA-DNA hybridization and in silico genome comparisons established NW4327 as a novel strain of P. agarivorans. Genes associated with type IV pili, mannose-sensitive hemagglutinin pili, and curli formation were identified in NW4327. One gene cluster encoding ATP-binding cassette (ABC) transporter, HlyD and TolC, and two clusters related to the general secretion pathway indicated the presence of type I secretion system (T1SS) and type II secretion system (T2SS), respectively. A contiguous gene cluster of at least 19 genes related to type VI secretion system (T6SS) which included all 13 core genes was found. The absence of T1SS and T6SS in nonpathogenic P. agarivorans S816 established NW4327 as the virulent strain. Serine proteases and metalloproteases of the classes S8, S9, M4, M6, M48, and U32 were identified in NW4327, many of which can degrade collagen. Collagenase activity in NW4327 and its absence in the nonpathogenic P. agarivorans KMM 255(T) reinforced the invasiveness of NW4327. This is the first report unambiguously identifying a sponge pathogen and providing the first insights into the virulence genes present in any pathogenic Pseudoalteromonas genome. The investigation supports a theoretical study predicting high abundance of terrestrial virulence gene homologues in marine bacteria.

Indexed as

Coral ReefsPhenotypeAnimalsBacterial Secretion SystemsBase SequenceCluster AnalysisCollagenasesComputational BiologyDNA GyraseMetalloproteasesMicroscopy, Electron, TransmissionMolecular Sequence DataMultigene FamilyNucleic Acid HybridizationPacific OceanPhylogenyBacterial Secretion SystemsCollagenasesDNA GyraseMetalloproteasesRNA, Ribosomal, 16SSerine Proteases

Identifiers

PMID25837832
OpenAlexW2068882113

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.