Evidence map›Paper›PMID 25833947›Full record

ArticleThe Journal of biological chemistry2015

Crucial roles of single residues in binding affinity, specificity, and promiscuity in the cellulosomal cohesin-dockerin interface.

Michal Slutzki, Dan Reshef, Yoav Barak, Rachel Haimovitz, Shahar Rotem-Bamberger, Raphael Lamed, Edward A Bayer, Ora Schueler-Furman

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Frontiers in bioengineering and biotechnology · 2023
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Michal SlutzkiFrom the Department of Biological Chemistry, The Weizmann Institute of Science, 7610001 Rehovot, Israel.
Dan ReshefDepartment of Microbiology and Molecular Genetics, Institute for Medical Research Israel-Canada, Hadassah Medical School, The Hebrew University, 9112102 Jerusalem, Israel, and.
Yoav BarakFrom the Department of Biological Chemistry, The Weizmann Institute of Science, 7610001 Rehovot, Israel.
Rachel HaimovitzFrom the Department of Biological Chemistry, The Weizmann Institute of Science, 7610001 Rehovot, Israel.
Shahar Rotem-BambergerDepartment of Microbiology and Molecular Genetics, Institute for Medical Research Israel-Canada, Hadassah Medical School, The Hebrew University, 9112102 Jerusalem, Israel, and.
Raphael LamedDepartment of Molecular Microbiology and Biotechnology, Tel Aviv University, 6997801 Ramat Aviv, Israel.
Edward A BayerFrom the Department of Biological Chemistry, The Weizmann Institute of Science, 7610001 Rehovot, Israel.
Ora Schueler-FurmanDepartment of Microbiology and Molecular Genetics, Institute for Medical Research Israel-Canada, Hadassah Medical School, The Hebrew University, 9112102 Jerusalem, Israel, and oraf@ekmd.huji.ac.il.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Interactions between cohesin and dockerin modules play a crucial role in the assembly of multienzyme cellulosome complexes. Although intraspecies cohesin and dockerin modules bind in general with high affinity but indiscriminately, cross-species binding is rare. Here, we combined ELISA-based experiments with Rosetta-based computational design to evaluate the contribution of distinct residues at the Clostridium thermocellum cohesin-dockerin interface to binding affinity, specificity, and promiscuity. We found that single mutations can show distinct and significant effects on binding affinity and specificity. In particular, mutations at cohesin position Asn(37) show dramatic variability in their effect on dockerin binding affinity and specificity: the N37A mutant binds promiscuously both to cognate (C. thermocellum) as well as to non-cognate Clostridium cellulolyticum dockerin. N37L in turn switches binding specificity: compared with the wild-type C. thermocellum cohesin, this mutant shows significantly increased preference for C. cellulolyticum dockerin combined with strongly reduced binding to its cognate C. thermocellum dockerin. The observation that a single mutation can overcome the naturally observed specificity barrier provides insights into the evolutionary dynamics of this system that allows rapid modulation of binding specificity within a high affinity background.

Indexed as

Acetivibrio thermocellusBacterial ProteinsCarbohydratesCarrier ProteinsCell Cycle ProteinsCelluloseChromosomal Proteins, Non-HistoneCohesinsComputational BiologyEnzyme-Linked Immunosorbent AssayInhibitory Concentration 50MutationProtein Array AnalysisProtein BindingProtein Structure, TertiaryRuminiclostridium cellulolyticumBacterial ProteinsCarbohydratesCarrier ProteinsCell Cycle ProteinsCelluloseChromosomal Proteins, Non-HistoneCohesinscarbohydrate-binding proteincellulosomeClostridium cellulolyticumClostridium thermocellumcohesincomputer modelingdockeriniELISAprotein complexsubstrate specificity

Identifiers

PMID25833947
PMCPMC4447945

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.