Evidence map›Paper›PMID 25833944›Full record

ArticleThe Journal of biological chemistry2015

The N-terminal Set-β Protein Isoform Induces Neuronal Death.

Ephraim F Trakhtenberg, Melina I Morkin, Karan H Patel, Stephanie G Fernandez, Alan Sang, Peter Shaw, Xiongfei Liu, Yan Wang, Gregory M Mlacker, Han Gao and 4 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. The next decade of SET: from an oncoprotein to beyond.Journal of molecular cell biology · 2024
    Review
  3. Article
  4. Regulation of SET Gene Expression by NFkB.Molecular neurobiology · 2017
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 3 countries.

Ephraim F TrakhtenbergFrom the Neuroscience Program and Bascom Palmer Eye Institute and Interdisciplinary Stem Cell Institute, and Ephraim.Trakhtenberg@childrens.harvard.edu.
Melina I MorkinBascom Palmer Eye Institute and Interdisciplinary Stem Cell Institute, and the Shiley Eye Center, University of California San Diego, La Jolla, California 92093.
Karan H PatelBascom Palmer Eye Institute and Interdisciplinary Stem Cell Institute, and.
Stephanie G FernandezBascom Palmer Eye Institute and Interdisciplinary Stem Cell Institute, and.
Alan Sangthe Shiley Eye Center, University of California San Diego, La Jolla, California 92093.
Peter Shawthe Shiley Eye Center, University of California San Diego, La Jolla, California 92093.
Xiongfei LiuBascom Palmer Eye Institute and Interdisciplinary Stem Cell Institute, and.
Yan WangBascom Palmer Eye Institute and Interdisciplinary Stem Cell Institute, and the Shiley Eye Center, University of California San Diego, La Jolla, California 92093.
Gregory M MlackerBascom Palmer Eye Institute and Interdisciplinary Stem Cell Institute, and.
Han GaoFrom the Neuroscience Program and.
Dmitry VelmeshevMolecular and Cellular Pharmacology Program,University of Miami Miller School of Medicine, Miami, Florida 33136.
Susan M DombrowskiGenomatix Software, Ann Arbor, Michigan 48108, the Department of Obstetrics and Gynecology, Wayne State University School of Medicine, Detroit, Michigan 48201.
Michael P VitekOncotide Pharmaceuticals Inc., Durham, North Carolina 27709, and the Department of Neurology, Duke University Medical Center, Durham, North Carolina 27708.
Jeffrey L GoldbergFrom the Neuroscience Program and Bascom Palmer Eye Institute and Interdisciplinary Stem Cell Institute, and the Shiley Eye Center, University of California San Diego, La Jolla, California 92093, JLGoldberg@ucsd.edu.
Stem Cell Institute · PAUniversity of California San Diego · USThe California Eye Institute · USDuke Medical Center · USSociety for Neuroscience · USUniversity of Miami · USWayne State University · US

Funding

Shared Equipment ModuleP30EY014801 · NEI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Victor L Perez · 2004 to 2026
$12.2M
Vision BiostatisticsP30EY022589 · NEI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Derek Stuart Welsbie · 2012 to 2026
$10.3M
Kruppel-like Transcription Factors in Retinal Ganglion Cell RegenerationR01EY020913 · NEI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI GOLDBERG, JEFFREY L · 2010 to 2013
$2.2M
PREDOCTORAL TRAINING PROGRAM IN THE NEUROSCIENCEST32NS007492 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI BIXBY, JOHN L · 2001 to 2010
$1.8M
NEI NIH HHS EY020913NEI NIH HHS P30 EY014801NEI NIH HHS P30 EY022589NEI NIH HHS P30-EY022589NEI NIH HHS R01 EY020913NINDS NIH HHS T32 NS007492NINDS NIH HHS T32NS007492
6 · The paper itself

Abstract

Set-β protein plays different roles in neurons, but the diversity of Set-β neuronal isoforms and their functions have not been characterized. The expression and subcellular localization of Set-β are altered in Alzheimer disease, cleavage of Set-β leads to neuronal death after stroke, and the full-length Set-β regulates retinal ganglion cell (RGC) and hippocampal neuron axon growth and regeneration in a subcellular localization-dependent manner. Here we used various biochemical approaches to investigate Set-β isoforms and their role in the CNS, using the same type of neurons, RGCs, across studies. We found multiple alternatively spliced isoforms expressed from the Set locus in purified RGCs. Set transcripts containing the Set-β-specific exon were the most highly expressed isoforms. We also identified a novel, alternatively spliced Set-β transcript lacking the nuclear localization signal and demonstrated that the full-length (∼39-kDa) Set-β is localized predominantly in the nucleus, whereas a shorter (∼25-kDa) Set-β isoform is localized predominantly in the cytoplasm. Finally, we show that an N-terminal Set-β cleavage product can induce neuronal death.

Indexed as

ApoptosisAlternative SplicingAnimalsAnimals, NewbornBlotting, WesternCarrier ProteinsCell ProliferationCells, CulturedDNA-Binding ProteinsFluorescent Antibody TechniqueHistone ChaperonesImmunoenzyme TechniquesMiceMice, Inbred C57BLNeuronsNuclear ProteinsCarrier ProteinsDNA-Binding ProteinsHistone ChaperonesNuclear ProteinsOncogene ProteinsProtein IsoformsRNA, MessengerSET protein, mouseSET protein, ratalternative splicingcell deathneuronprotein translocationSet-βsubcellular fractionation

Identifiers

PMID25833944
PMCPMC4505589
OpenAlexW2010236925

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.