Evidence map›Paper›PMID 25833741›Full record

ArticleNature communications2015

Ptch1 and Gli regulate Shh signalling dynamics via multiple mechanisms.

Michael Cohen, Anna Kicheva, Ana Ribeiro, Robert Blassberg, Karen M Page, Chris P Barnes, James Briscoe

Abstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 94 papers.

0numbers the graph read from it
0cells of the map it votes in
94citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

94 citing papers in PubMed.

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  14. Dynamics of positional information in the vertebrate neural tube.Journal of the Royal Society, Interface · 2024
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34 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Michael CohenMRC-National Institute for Medical Research, The Ridgeway, Mill Hill, London NW7 1AA, UK.
Anna KichevaMRC-National Institute for Medical Research, The Ridgeway, Mill Hill, London NW7 1AA, UK.
Ana RibeiroMRC-National Institute for Medical Research, The Ridgeway, Mill Hill, London NW7 1AA, UK.ORCID 0000000301329740
Robert BlassbergMRC-National Institute for Medical Research, The Ridgeway, Mill Hill, London NW7 1AA, UK.
Karen M PageDepartment of Mathematics and CoMPLEX, University College London, Gower Street, London WC1E 6BT, UK.
Chris P Barnes1] Department of Cell and Developmental Biology, University College London, Gower Street, London WC1E 6BT, UK [2] Department of Genetics, Evolution and Environment, University College London, Gower Street, London WC1E 6BT, UK.
James BriscoeMRC-National Institute for Medical Research, The Ridgeway, Mill Hill, London NW7 1AA, UK.

Funding

Medical Research Council U117560541Wellcome Trust 097319Wellcome Trust 097319/Z/11/ZWellcome Trust WT098325MAWellcome Trust WT098326MA
6 · The paper itself

Abstract

In the vertebrate neural tube, the morphogen Sonic Hedgehog (Shh) establishes a characteristic pattern of gene expression. Here we quantify the Shh gradient in the developing mouse neural tube and show that while the amplitude of the gradient increases over time, the activity of the pathway transcriptional effectors, Gli proteins, initially increases but later decreases. Computational analysis of the pathway suggests three mechanisms that could contribute to this adaptation: transcriptional upregulation of the inhibitory receptor Ptch1, transcriptional downregulation of Gli and the differential stability of active and inactive Gli isoforms. Consistent with this, Gli2 protein expression is downregulated during neural tube patterning and adaptation continues when the pathway is stimulated downstream of Ptch1. Moreover, the Shh-induced upregulation of Gli2 transcription prevents Gli activity levels from adapting in a different cell type, NIH3T3 fibroblasts, despite the upregulation of Ptch1. Multiple mechanisms therefore contribute to the intracellular dynamics of Shh signalling, resulting in different signalling dynamics in different cell types.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsDown-RegulationEmbryo, MammalianGreen Fluorescent ProteinsHedgehog ProteinsKruppel-Like Transcription FactorsMiceMice, TransgenicNeural TubeNIH 3T3 CellsPatched-1 ReceptorPatched ReceptorsReceptors, Cell SurfaceSignal TransductionUp-RegulationGli1 protein, mouseGreen Fluorescent ProteinsHedgehog ProteinsKruppel-Like Transcription FactorsPatched-1 ReceptorPatched ReceptorsPtch1 protein, mouseReceptors, Cell SurfaceShh protein, mouseZinc Finger Protein GLI1

Identifiers

PMID25833741
PMCPMC4396374

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.