Evidence map›Paper›PMID 25833708›Full record

ArticleMolecular biology of the cell2015

Glycogen synthase kinase-3 (Gsk-3) plays a fundamental role in maintaining DNA methylation at imprinted loci in mouse embryonic stem cells.

Gavin D Meredith, Anthony D'Ippolito, Miroslav Dudas, Leigh C Zeidner, Logan Hostetter, Kelsie Faulds, Thomas H Arnold, Anthony P Popkie, Bradley W Doble, George Marnellos and 3 more

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Gavin D MeredithThermo Fisher Scientific, Carlsbad, CA 92008.
Anthony D'IppolitoThermo Fisher Scientific, Carlsbad, CA 92008 Center for Human and Molecular Genetics, Nationwide Children's Hospital, Columbus, OH 43205.
Miroslav DudasThermo Fisher Scientific, Carlsbad, CA 92008.
Leigh C ZeidnerCenter for Human and Molecular Genetics, Nationwide Children's Hospital, Columbus, OH 43205.
Logan HostetterDepartment of Integrative Biology, University of Colorado Denver, Denver, CO 80204.
Kelsie FauldsDepartment of Integrative Biology, University of Colorado Denver, Denver, CO 80204.
Thomas H ArnoldDepartment of Integrative Biology, University of Colorado Denver, Denver, CO 80204.
Anthony P PopkieGraduate Program in Molecular, Cellular and Developmental Biology, Ohio State University, Columbus, OH 43210.
Bradley W DobleMcMaster Stem Cell and Cancer Research Institute, McMaster University, Hamilton, ON L8N 3Z5, Canada.
George MarnellosThermo Fisher Scientific, Carlsbad, CA 92008.
Christopher AdamsThermo Fisher Scientific, Carlsbad, CA 92008.
Yulei WangThermo Fisher Scientific, Foster City, CA 94404.
Christopher J PhielCenter for Human and Molecular Genetics, Nationwide Children's Hospital, Columbus, OH 43205 Department of Integrative Biology, University of Colorado Denver, Denver, CO 80204 christopher.phiel@ucdenver.edu.
Thermo Fisher Scientific (United States) · USNationwide Children's Hospital · USUniversity of Colorado Denver · USMcMaster University · CAThe Ohio State University · US

Funding

Effects of Conditional GSK3 Knockout on the Pathogenesis of Alzheimers DiseaseR01AG031883 · NIA · UNIVERSITY OF COLORADO DENVER · PI PHIEL, CHRISTOPHER J · 2008 to 2012
$1.4M
NIA NIH HHS R01 AG031883NIA NIH HHS R01AG031883
6 · The paper itself

Abstract

Glycogen synthase kinase-3 (Gsk-3) is a key regulator of multiple signal transduction pathways. Recently we described a novel role for Gsk-3 in the regulation of DNA methylation at imprinted loci in mouse embryonic stem cells (ESCs), suggesting that epigenetic changes regulated by Gsk-3 are likely an unrecognized facet of Gsk-3 signaling. Here we extend our initial observation to the entire mouse genome by enriching for methylated DNA with the MethylMiner kit and performing next-generation sequencing (MBD-Seq) in wild-type and Gsk-3α(-/-);Gsk-3β(-/-) ESCs. Consistent with our previous data, we found that 77% of known imprinted loci have reduced DNA methylation in Gsk-3-deficient ESCs. More specifically, we unambiguously identified changes in DNA methylation within regions that have been confirmed to function as imprinting control regions. In many cases, the reduced DNA methylation at imprinted loci in Gsk-3α(-/-);Gsk-3β(-/-) ESCs was accompanied by changes in gene expression as well. Furthermore, many of the Gsk-3-dependent, differentially methylated regions (DMRs) are identical to the DMRs recently identified in uniparental ESCs. Our data demonstrate the importance of Gsk-3 activity in the maintenance of DNA methylation at a majority of the imprinted loci in ESCs and emphasize the importance of Gsk-3-mediated signal transduction in the epigenome.

Indexed as

DNA MethylationGenetic LociGenomic ImprintingAnimalsEmbryonic Stem CellsGlycogen Synthase Kinase 3Glycogen Synthase Kinase 3 betaHigh-Throughput Nucleotide SequencingMiceMice, KnockoutSignal TransductionGlycogen Synthase Kinase 3glycogen synthase kinase 3 alphaGlycogen Synthase Kinase 3 betaGSK3B protein, humanGsk3b protein, mouse

Identifiers

PMID25833708
PMCPMC4472022
OpenAlexW2099472522

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.