Evidence map›Paper›PMID 25833042›Full record

ArticleJournal of virology2015

Noncapped Alphavirus Genomic RNAs and Their Role during Infection.

K J Sokoloski, K C Haist, T E Morrison, S Mukhopadhyay, R W Hardy

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
8.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 54 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. The advent of clinical self-amplifying RNA vaccines.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Structural basis and dynamics of Chikungunya alphavirus RNA capping by nsP1 capping pores.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Article
  14. Sequestering the 5'-cap for viral RNA packaging.BioEssays : news and reviews in molecular, cellular and developmental biology · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Molecular Virology of Chikungunya Virus.Current topics in microbiology and immunology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

K J SokoloskiDepartment of Biology, Indiana University, Bloomington, Indiana, USA.
K C HaistDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, Colorado, USA.
T E MorrisonDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, Colorado, USA.
S MukhopadhyayDepartment of Biology, Indiana University, Bloomington, Indiana, USA sumukhop@indiana.edu rwhardy@indiana.edu.
R W HardyDepartment of Biology, Indiana University, Bloomington, Indiana, USA sumukhop@indiana.edu rwhardy@indiana.edu.
Indiana University Bloomington · USUniversity of Colorado Denver · US

Funding

Mechanisms of immune suppression during arthritogenic alphavirus infectionsR01AI108725 · NIAID · UNIVERSITY OF COLORADO DENVER · PI MORRISON, THOMAS E · 2014 to 2018
$1.9M
Host determinants of alphavirus replicationR01AI090077 · NIAID · TRUSTEES OF INDIANA UNIVERSITY · PI HARDY, RICHARD W · 2010 to 2014
$1.8M
Characterizing the Role of Encapsidated Host Ribosomes in Alphavirus InfectivityF32AI104217 · NIAID · TRUSTEES OF INDIANA UNIVERSITY · PI SOKOLOSKI, KEVIN JOSEPH · 2013 to 2014
$107k
NIAID NIH HHS F32 AI104217NIAID NIH HHS F32AI104217NIAID NIH HHS R01 AI08725NIAID NIH HHS R01 AI090077NIAID NIH HHS R01 AI108725
6 · The paper itself

Abstract

unlabelledAlphaviruses are enveloped positive-sense RNA viruses that exhibit a wide host range consisting of vertebrate and invertebrate species. Previously we have reported that the infectivity of Sindbis virus (SINV), the model alphavirus, was largely a function of the cell line producing the viral particles. Mammalian-cell-derived SINV particles, on average, exhibit a higher particle-to-PFU ratio than mosquito cell-derived SINV particles. Nevertheless, the outcome of nonproductive infection, the molecular traits that determine particle infectivity and the biological importance of noninfectious particles were, prior to this study, unknown. Here, we report that the incoming genomic RNAs of noninfectious SINV particles undergo rapid degradation following infection. Moreover, these studies have led to the identification of the absence of the 5' cap structure as a primary molecular determinant of particle infectivity. We show that the genomic RNAs of alphaviruses are not universally 5' capped, with a significant number of noncapped genomic RNA produced early in infection. The production of noncapped viral genomic RNAs is important to the establishment and maintenance of alphaviral infection. IMPORTANCE: This report is of importance to the field of virology for three reasons. First, these studies demonstrate that noncapped Sindbis virus particles are produced as a result of viral RNA synthesis. Second, this report is, to our knowledge, the first instance of the direct measurement of the half-life of an incoming genomic RNA from a positive-sense RNA virus. Third, these studies indicate that alphaviral infection is likely a concerted effort of infectious and noninfectious viral particles.

Indexed as

Genome, ViralHost-Pathogen InteractionsAlphavirus InfectionsAnimalsCell LineHumansRNA CapsRNA StabilityRNA, ViralSindbis VirusRNA CapsRNA, Viral

Identifiers

PMID25833042
PMCPMC4442418
OpenAlexW2093067122

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.