Evidence map›Paper›PMID 25831539›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Motion of proximal histidine and structural allosteric transition in soluble guanylate cyclase.

Byung-Kuk Yoo, Isabelle Lamarre, Jean-Louis Martin, Fabrice Rappaport, Michel Negrerie

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. The Mechanism of Biochemical NO-Sensing: Insights from Computational Chemistry.Chemistry (Weinheim an der Bergstrasse, Germany) · 2022
    Article
  5. Review
  6. Ultrafast dynamics of heme distortion in the OCommunications chemistry · 2021
    Article
  7. Review
  8. Tissue-specific regulation of cytochrome c by post-translational modifications: respiration, the mitochondrial membrane potential, ROS, and apoptosis.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Review
  9. Review
  10. Review
  11. Histidine residues are important for preserving the structure and heme binding to the C. elegans HRG-3 heme-trafficking protein.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Byung-Kuk YooLaboratoire d'Optique et Biosciences, INSERM U1182, Ecole Polytechnique, 91128 Palaiseau Cedex, France; and.
Isabelle LamarreLaboratoire d'Optique et Biosciences, INSERM U1182, Ecole Polytechnique, 91128 Palaiseau Cedex, France; and.
Jean-Louis MartinLaboratoire d'Optique et Biosciences, INSERM U1182, Ecole Polytechnique, 91128 Palaiseau Cedex, France; and.
Fabrice RappaportLaboratoire de Physiologie Membranaire et Moléculaire du Chloroplaste, UMR7141, Institut de Biologie Physico-Chimie, 75005 Paris, France.
Michel NegrerieLaboratoire d'Optique et Biosciences, INSERM U1182, Ecole Polytechnique, 91128 Palaiseau Cedex, France; and michel.negrerie@polytechnique.fr.
École Polytechnique · FRInserm · FRBiologie du Chloroplaste et Perception de la Lumière chez les Microalgues

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We investigated the changes of heme coordination in purified soluble guanylate cyclase (sGC) by time-resolved spectroscopy in a time range encompassing 11 orders of magnitude (from 1 ps to 0.2 s). After dissociation, NO either recombines geminately to the 4-coordinate (4c) heme (τG1 = 7.5 ps; 97 ± 1% of the population) or exits the heme pocket (3 ± 1%). The proximal His rebinds to the 4c heme with a 70-ps time constant. Then, NO is distributed in two approximately equal populations (1.5%). One geminately rebinds to the 5c heme (τG2 = 6.5 ns), whereas the other diffuses out to the solution, from where it rebinds bimolecularly (τ = 50 μs with [NO] = 200 μM) forming a 6c heme with a diffusion-limited rate constant of 2 × 10(8) M(-1)⋅s(-1). In both cases, the rebinding of NO induces the cleavage of the Fe-His bond that can be observed as an individual reaction step. Saliently, the time constant of bond cleavage differs depending on whether NO binds geminately or from solution (τ5C1 = 0.66 μs and τ5C2 = 10 ms, respectively). Because the same event occurs with rates separated by four orders of magnitude, this measurement implies that sGC is in different structural states in both cases, having different strain exerted on the Fe-His bond. We show here that this structural allosteric transition takes place in the range 1-50 μs. In this context, the detection of NO binding to the proximal side of sGC heme is discussed.

Indexed as

Allosteric SiteAnimalsCattleGuanylate CyclaseHemeHemoglobinsHistidineIronMolecular ConformationNitric OxideProtein BindingReceptors, Cytoplasmic and NuclearSignal TransductionSoluble Guanylyl CyclaseSpectrophotometryTime FactorsGuanylate CyclaseHemeHemoglobinsHistidineIronNitric OxideReceptors, Cytoplasmic and NuclearSoluble Guanylyl Cyclaseallosterynitric oxideprotein activationsoluble guanylate cyclasetime-resolved absorption spectroscopy

Identifiers

PMID25831539
PMCPMC4394285
OpenAlexW2072098685

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.