Evidence map›Paper›PMID 25831519›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

An adenosine triphosphate-independent proteasome activator contributes to the virulence of Mycobacterium tuberculosis.

Jordan B Jastrab, Tong Wang, J Patrick Murphy, Lin Bai, Kuan Hu, Remco Merkx, Jessica Huang, Champak Chatterjee, Huib Ovaa, Steven P Gygi and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
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  12. Control of Toxin-Antitoxin Systems by Proteases inFrontiers in molecular biosciences · 2021
    Review
  13. Review
  14. Article
  15. Selective Phenylimidazole-Based Inhibitors of theJournal of medicinal chemistry · 2019
    Article
  16. Article
  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 2 countries.

Jordan B JastrabDepartment of Microbiology, New York University School of Medicine, New York, NY 10016;
Tong WangBiosciences Department, Brookhaven National Laboratory, Upton, NY 11973;
J Patrick MurphyDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115;
Lin BaiBiosciences Department, Brookhaven National Laboratory, Upton, NY 11973;
Kuan HuBiosciences Department, Brookhaven National Laboratory, Upton, NY 11973; Department of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY 11794;
Remco MerkxDivision of Cell Biology, Netherlands Cancer Institute, 1066 CX Amsterdam, The Netherlands; and.
Jessica HuangDepartment of Chemistry, University of Washington, Seattle, WA 98195.
Champak ChatterjeeDepartment of Chemistry, University of Washington, Seattle, WA 98195.
Huib OvaaDivision of Cell Biology, Netherlands Cancer Institute, 1066 CX Amsterdam, The Netherlands; and.
Steven P GygiDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115;
Huilin LiBiosciences Department, Brookhaven National Laboratory, Upton, NY 11973; Department of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY 11794;
K Heran DarwinDepartment of Microbiology, New York University School of Medicine, New York, NY 10016; heran.darwin@med.nyu.edu.
Brookhaven National Laboratory · USHarvard University · USNew York University · USStony Brook University · USUniversity of Washington · USOncode Institute · NLThe Netherlands Cancer Institute · NL

Funding

New Sample Multiplexing Technologies to Identify Chemical Probes and Illuminate Ubiquitin BiologyR01GM067945 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI GYGI, STEVEN P · 2003 to 2024
$10.5M
INFECTIOUS DISEASES &BASIC MICROBIOLOGICAL MECHANISMST32AI007180 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WEISER, JEFFREY NEAL · 1985 to 2022
$8.9M
PROTEASOME-DEPENDENT DEGRADATION IN MYCOBACTERIUM TUBERCULOSISR01AI088075 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Katerina Heran Darwin · 2011 to 2026
$6.5M
Structure Biology of Mycobacterium Tuberculosis Pup-Proteasome PathwayR01AI070285 · NIAID · VAN ANDEL RESEARCH INSTITUTE · PI LI, HUILIN · 2007 to 2022
$6.5M
Chemical Strategies to Investigate Gene Regulation By Histone SumoylationR01GM110430 · NIGMS · UNIVERSITY OF WASHINGTON · PI CHATTERJEE, CHAMPAK · 2014 to 2022
$2.5M
A 200KV CRYO-TEM FOR IMAGING BIOLOGICAL STRUCTURESS10OD012272 · OD · STATE UNIVERSITY NEW YORK STONY BROOK · PI NEIMAN, AARON M · 2015 to 2015
$2.0M
CCD Camera for Cryo-EMS10RR025415 · NCRR · STATE UNIVERSITY NEW YORK STONY BROOK · PI LI, HUILIN · 2009 to 2009
$244k
Characterization of a novel cofactor of the M. tuberculosis proteasomeF30AI110067 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI JASTRAB, JORDAN B · 2014 to 2017
$111k
NCRR NIH HHS S10 RR025415NIAID NIH HHS AI070285NIAID NIH HHS AI088075NIAID NIH HHS F30 AI110067NIAID NIH HHS R01 AI070285NIAID NIH HHS R01 AI088075NIAID NIH HHS T32 AI007180NIGMS NIH HHS GM110430NIGMS NIH HHS R01 GM067945NIGMS NIH HHS R01 GM110430
6 · The paper itself

Abstract

Mycobacterium tuberculosis encodes a proteasome that is highly similar to eukaryotic proteasomes and is required to cause lethal infections in animals. The only pathway known to target proteins for proteasomal degradation in bacteria is pupylation, which is functionally analogous to eukaryotic ubiquitylation. However, evidence suggests that the M. tuberculosis proteasome contributes to pupylation-independent pathways as well. To identify new proteasome cofactors that might contribute to such pathways, we isolated proteins that bound to proteasomes overproduced in M. tuberculosis and found a previously uncharacterized protein, Rv3780, which formed rings and capped M. tuberculosis proteasome core particles. Rv3780 enhanced peptide and protein degradation by proteasomes in an adenosine triphosphate (ATP)-independent manner. We identified putative Rv3780-dependent proteasome substrates and found that Rv3780 promoted robust degradation of the heat shock protein repressor, HspR. Importantly, an M. tuberculosis Rv3780 mutant had a general growth defect, was sensitive to heat stress, and was attenuated for growth in mice. Collectively, these data demonstrate that ATP-independent proteasome activators are not confined to eukaryotes and can contribute to the virulence of one the world's most devastating pathogens.

Indexed as

VirulenceAdenosine TriphosphateAmino Acid MotifsAmino Acid SequenceAnimalsBacterial ProteinsBinding SitesEscherichia coliFemaleHeat-Shock ProteinsHot TemperatureMiceMice, Inbred C57BLMolecular Sequence DataMycobacterium tuberculosisPeptidesAdenosine TriphosphateBacterial ProteinsHeat-Shock ProteinsPeptidesProteasome Endopeptidase ComplexRecombinant ProteinsRNAUbiquitinactivatordegradationmycobacteriumproteasometuberculosis

Identifiers

PMID25831519
PMCPMC4394314
OpenAlexW2099403391

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.