Evidence map›Paper›PMID 25831512›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

A multistage mathematical approach to automated clustering of high-dimensional noisy data.

Alexander Friedman, Michael D Keselman, Leif G Gibb, Ann M Graybiel

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Analysis of complex neural circuits with nonlinear multidimensional hidden state models.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Alexander FriedmanMcGovern Institute for Brain Research, Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139.
Michael D KeselmanMcGovern Institute for Brain Research, Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139.
Leif G GibbMcGovern Institute for Brain Research, Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139.
Ann M GraybielMcGovern Institute for Brain Research, Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139 graybiel@mit.edu.

Funding

Functional and anatomical characterization of the striosomal systemR01MH060379 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Ann M Graybiel · 2000 to 2026
$8.7M
NIMH NIH HHS R01 MH060379
6 · The paper itself

Abstract

A critical problem faced in many scientific fields is the adequate separation of data derived from individual sources. Often, such datasets require analysis of multiple features in a highly multidimensional space, with overlap of features and sources. The datasets generated by simultaneous recording from hundreds of neurons emitting phasic action potentials have produced the challenge of separating the recorded signals into independent data subsets (clusters) corresponding to individual signal-generating neurons. Mathematical methods have been developed over the past three decades to achieve such spike clustering, but a complete solution with fully automated cluster identification has not been achieved. We propose here a fully automated mathematical approach that identifies clusters in multidimensional space through recursion, which combats the multidimensionality of the data. Recursion is paired with an approach to dimensional evaluation, in which each dimension of a dataset is examined for its informational importance for clustering. The dimensions offering greater informational importance are given added weight during recursive clustering. To combat strong background activity, our algorithm takes an iterative approach of data filtering according to a signal-to-noise ratio metric. The algorithm finds cluster cores, which are thereafter expanded to include complete clusters. This mathematical approach can be extended from its prototype context of spike sorting to other datasets that suffer from high dimensionality and background activity.

Indexed as

Cluster AnalysisAction PotentialsAlgorithmsAnimalsAutomationElectrodesHumansModels, NeurologicalModels, TheoreticalNeuronsRatsReproducibility of ResultsSignal-To-Noise RatioSoftwarecurse of dimensionalitydimensional evaluationdimensional selectiondimension reductionspike sorting

Identifiers

PMID25831512
PMCPMC4394271

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.