Evidence map›Paper›PMID 25831496›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

T-cell receptor α enhancer is inactivated in αβ T lymphocytes.

Beatriz del Blanco, Úrsula Angulo, Michael S Krangel, Cristina Hernández-Munain

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. E protein binding at theFrontiers in immunology · 2023
    Article
  3. Review
  4. Article
  5. Review
  6. Alterations in chromatin at antigen receptor loci define lineage progression during B lymphopoiesis.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  7. Review
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Beatriz del BlancoDepartment of Cellular Biology and Immunology, Instituto de Parasitología y Biomedicina "López-Neyra"-Consejo Superior de Investigaciones Científicas (IPBLN-CSIC), PTS Granada, 18016-Armilla, Granada, Spain; and.
Úrsula AnguloDepartment of Cellular Biology and Immunology, Instituto de Parasitología y Biomedicina "López-Neyra"-Consejo Superior de Investigaciones Científicas (IPBLN-CSIC), PTS Granada, 18016-Armilla, Granada, Spain; and.
Michael S KrangelDepartment of Immunology, Duke University Medical Center, Durham, NC 27720.
Cristina Hernández-MunainDepartment of Cellular Biology and Immunology, Instituto de Parasitología y Biomedicina "López-Neyra"-Consejo Superior de Investigaciones Científicas (IPBLN-CSIC), PTS Granada, 18016-Armilla, Granada, Spain; and chmunain@ipb.csic.es.
Instituto de Parasitología y Biomedicina "López - Neyra" · ESConsejo Superior de Investigaciones Científicas · ESDuke University Hospital · US

Funding

Control Of Tcr Delta And Tcr Alpha RearrangementR37GM041052 · NIGMS · DUKE UNIVERSITY · PI KRANGEL, MICHAEL S · 2006 to 2015
$5.1M
NIGMS NIH HHS R37 GM041052NIGMS NIH HHS R37 GM41052
6 · The paper itself

Abstract

The Tcra enhancer (Eα) is essential for Tcra locus germ-line transcription and primary Vα-to-Jα recombination during thymocyte development. We found that Eα is inhibited late during thymocyte differentiation and in αβ T lymphocytes, indicating that it is not required to drive transcription of rearranged Tcra genes. Eα inactivation resulted in the disruption of functional long-range enhancer-promoter interactions and was associated with loss of Eα-dependent histone modifications at promoter and enhancer regions, and reduced expression and recruitment of E2A to the Eα enhanceosome in T cells. Enhancer activity could not be recovered by T-cell activation, by forced expression of E2A or by the up-regulation of this and other transcription factors in the context of T helper differentiation. Our results argue that the major function of Eα is to coordinate the formation of a chromatin hub that drives Vα and Jα germ-line transcription and primary rearrangements in thymocytes and imply the existence of an Eα-independent mechanism to activate transcription of the rearranged Tcra locus in αβ T cells.

Indexed as

Enhancer Elements, GeneticGene Rearrangement, alpha-Chain T-Cell Antigen ReceptorAnimalsCell DifferentiationCell SeparationChromatinExonsFlow CytometryHistonesMiceMice, TransgenicReceptors, Antigen, T-Cell, alpha-betaThymocytesT-LymphocytesT-Lymphocytes, Helper-InducerTranscriptional ActivationChromatinHistonesReceptors, Antigen, T-Cell, alpha-betaenhancerT-cell developmentT-cell receptortranscription

Identifiers

PMID25831496
PMCPMC4394246
OpenAlexW2071863330

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.