Evidence map›Paper›PMID 25831015›Full record

ArticleAutophagy2015

AU4S: a novel synthetic peptide to measure the activity of ATG4 in living cells.

Zhenhong Ni, Yi Gong, Xufang Dai, Wen Ding, Bin Wang, Haiyan Gong, Liyan Qin, Panke Cheng, Song Li, Jiqin Lian and 1 more

Abstract read
In one paragraph

Article in Autophagy, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Zhenhong Nia Department of Biochemistry and Molecular Biology; College of Basic Medical Sciences ; Third Military Medical University ; Chongqing , China.
Yi Gong
Xufang Dai
Wen Ding
Bin Wang
Haiyan Gong
Liyan Qin
Panke Cheng
Song Li
Jiqin Lian
Fengtian He

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ATG4 plays a key role in autophagy induction, but the methods for monitoring ATG4 activity in living cells are limited. Here we designed a novel fluorescent peptide named AU4S for noninvasive detection of ATG4 activity in living cells, which consists of the cell-penetrating peptide (CPP), ATG4-recognized sequence "GTFG," and the fluorophore FITC. Additionally, an ATG4-resistant peptide AG4R was used as a control. CPP can help AU4S or AG4R to penetrate cell membrane efficiently. AU4S but not AG4R can be recognized and cleaved by ATG4, leading to the change of fluorescence intensity. Therefore, the difference between AU4S- and AG4R-measured fluorescence values in the same sample, defined as "F-D value," can reflect ATG4 activity. By detecting the F-D values, we found that ATG4 activity paralleled LC3B-II levels in rapamycin-treated cells, but neither paralleled LC3B-II levels in starved cells nor presented a correlation with LC3B-II accumulation in WBCs from healthy donors or leukemia patients. However, when DTT was added to the system, ATG4 activity not only paralleled LC3B-II levels in starved cells in the presence or absence of autophagy inhibitors, but also presented a positive correlation with LC3B-II accumulation in WBCs from leukemia patients (R(2) = 0.5288). In conclusion, this study provides a convenient, rapid, and quantitative method to monitor ATG4 activity in living cells, which may be beneficial to basic and clinical research on autophagy.

Indexed as

Amino Acid SequenceAnimalsAutophagyAutophagy-Related ProteinsCell MembraneCells, CulturedCell SurvivalCysteine EndopeptidasesFluorescenceHepatocytesHumansMicrofilament ProteinsPeptidesRatsATG4A protein, humanAutophagy-Related ProteinsCysteine EndopeptidasesMicrofilament ProteinsPeptides3-MA, 3-methyladenineAc, acetylAG4R, ATG4-resistant peptideATG4ATG4, autophagy-related 4, cysteine peptidaseAU4SAU4S, autophagy-related 4 substrateautophagyCFP, cyan fluorescent proteinCPP, cell-penetrating peptideCQ, chloroquineDTT, dithiothreitolEBSS, Earle's balanced salt solutionFITC, fluorescein isothiocyanateHIV, human immunodeficiency virusLC3MAP1LC3/LC3, microtubule-associated protein 1 light chain 3NAC, N-acetyl-L-cysteineNRK, normal rat kidney cell linePAGE, polyacrylamide gel electrophoresisPBS, phosphate-buffered salinePE, phosphatidylethanolaminePLA2, phospholipase A2PMSF, phenylmethanesulfonyl fluoridePtdIns3K, phosphatidylinositol 3-kinaseROSROS, reactive oxygen speciesSDS, sodium dodecyl sulfateWBCs, white blood cellsYFP, yellow fluorescent protein

Identifiers

PMID25831015
PMCPMC4502827

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.