Evidence map›Paper›PMID 25830914›Full record

ArticlePloS one2015

Transcriptome analysis in patients with chronic kidney disease on hemodialysis disclosing a key role for CD16+CX3CR1+ monocytes.

Eva Schepers, Erica Houthuys, Annemieke Dhondt, Grim De Meyer, Nathalie Neirynck, Pascale Bernaert, Rafael Van den Bergh, Peter Brouckaert, Raymond Vanholder, Griet Glorieux

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Immunosenescence: an unexplored role in glomerulonephritis.Clinical & translational immunology · 2022
    Review
  2. Review
  3. Review
  4. Monocytes in Uremia.Toxins · 2020
    Review
  5. Article
  6. Article
  7. The systemic nature of CKD.Nature reviews. Nephrology · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Eva SchepersDepartment of Internal Medicine, Nephrology Division, Ghent University Hospital, Ghent, Belgium.
Erica HouthuysUnit for Medical Biotechnology, Inflammation Research Center (IRC), VIB and Laboratory for Protein Biochemistry and Biomolecular Engineering, Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium.
Annemieke DhondtDepartment of Internal Medicine, Nephrology Division, Ghent University Hospital, Ghent, Belgium.
Grim De MeyerDepartment of Internal Medicine, Cardiology Division, Ghent University Hospital, Ghent, Belgium.
Nathalie NeirynckDepartment of Internal Medicine, Cardiology Division, Ghent University Hospital, Ghent, Belgium.
Pascale BernaertRenal Division, AZ Maria Middelares, Ghent, Belgium.
Rafael Van den BerghDepartment of Molecular and Cellular Interactions, VIB-Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium; Laboratory of Cellular and Molecular Immunology, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium.
Peter BrouckaertDepartment of Biomedical and Molecular Biology, Ghent University, Zwijnaarde, Belgium.
Raymond VanholderDepartment of Internal Medicine, Nephrology Division, Ghent University Hospital, Ghent, Belgium.
Griet GlorieuxDepartment of Internal Medicine, Nephrology Division, Ghent University Hospital, Ghent, Belgium.
Ghent University Hospital · BEGhent University · BEAZ Maria Middelares · BEVrije Universiteit Brussel · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledThe risk for cardiovascular morbidity and mortality is increased in chronic kidney disease; in this process micro-inflammation plays an essential role. Responsible mechanisms remain to a large extent unidentified. In this pilot study transcriptome analysis of peripheral blood monocytes was used to identify in an unprejudiced manner which factors could be discriminative for cardiovascular disease in patients with chronic kidney disease on hemodialysis. Forty gender- and age-matched, non-diabetic, non-smoking subjects with CRP < 20 mg/L were recruited: 9 healthy controls, 11 patients with eGFR > 60 mL/min/1.73m2 and a history of cardiovascular event (CVE), 10 patients with chronic kidney disease stage 5 on hemodialysis without previous cardiovascular event (CKD5HD) and 10 with a previous cardiovascular event (CKD5HD/CVE). Monocytes were isolated and their mRNA was submitted to focused transcriptome analysis using a macroarray platform containing ca. 700 genes associated with macrophage functional capacity. The macroarray data indicated 9 genes (8 upregulated and 1 downregulated) with a significant differential expression in CKD5HD/CVE vs. CVE alone, after excluding genes differentially expressed in CKD5HD vs. CONTROL: For FCGR3A (CD16) and CX3CR1 (chemokine receptor) the upregulation vs. control and vs. CVE could be confirmed by quantitative RT-PCR for all CKD5HD patients. Furthermore, CX3CR1 relative expression on monocytes correlated with CRP. Flow cytometric analysis of purified monocytes confirmed a significant increase in the percentage of CD16 positive monocytes in all CKD5HD patients vs. control and CVE. The present study indicates the importance of a specific pro-inflammatory monocyte subpopulation, positive for CD16 and the co-expressed chemokine receptor, CX3CR1, discriminative for CKD5HD patients.

Indexed as

TranscriptomeAgedCardiovascular DiseasesCase-Control StudiesCells, CulturedCX3C Chemokine Receptor 1FemaleGene Expression ProfilingGPI-Linked ProteinsHumansMaleMiddle AgedMonocytesReceptors, ChemokineReceptors, IgGRenal DialysisCX3C Chemokine Receptor 1CX3CR1 protein, humanFCGR3B protein, humanGPI-Linked ProteinsReceptors, ChemokineReceptors, IgG

Identifiers

PMID25830914
PMCPMC4382044
OpenAlexW2016019554

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.