Evidence map›Paper›PMID 25830553›Full record

ArticlePlant signaling & behavior2015

The identification and characterization of specific ARF-Aux/IAA regulatory modules in plant growth and development.

Naden T Krogan, Thomas Berleth

Abstract read
In one paragraph

Article in Plant signaling & behavior, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Genome-Wide Identification of thePlants (Basel, Switzerland) · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Genome-Wide Analysis of the Auxin/Indoleacetic Acid (International journal of molecular sciences · 2024
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Naden T Krogana Department of Biology ; American University ; Washington DC USA.
Thomas Berleth

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The current model of auxin-inducible transcription describes numerous regulatory interactions between AUXIN RESPONSE FACTORs (ARFs) and Aux/IAAs. However, specific relationships between individual members of these families in planta remain largely uncharacterized. Using a systems biology approach, the entire suite of Aux/IAA genes directly regulated by the developmentally pivotal ARF MONOPTEROS (MP) was recently determined for multiple Arabidopsis tissue types. This study showed that MP directly targets distinct subclades of Aux/IAAs, revealing potential regulatory modules of redundantly acting Aux/IAAs involved in MP-dependent processes. Further, functional analyses indicated that the protein products of these targeted Aux/IAAs negatively feedback on MP. Thus, comprehensive identification of Aux/IAAs targeted by individual ARFs will generate biologically meaningful networks of ARF-Aux/IAA regulatory modules controlling distinct plant pathways.

Indexed as

Plant DevelopmentArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantIndoleacetic AcidsModels, BiologicalArabidopsis ProteinsIndoleacetic AcidsArabidopsis developmentARFAux/IAA genesAUXIN RESPONSE FACTOR (ARF)Auxin Response Factor; GRfunctional genomicsglucocorticoid receptor; MPMONOPTEROS.transcriptional regulatory network

Identifiers

PMID25830553
PMCPMC4622990

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.