Evidence map›Paper›PMID 25829442›Full record

ArticleThe Plant cell2015

Natural variation in epigenetic pathways affects the specification of female gamete precursors in Arabidopsis.

Daniel Rodríguez-Leal, Gloria León-Martínez, Ursula Abad-Vivero, Jean-Philippe Vielle-Calzada

Open access · hybridAbstract read
In one paragraph

Article in The Plant cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
5.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 56 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. The maternal embrace: the protection of plant embryos.Journal of experimental botany · 2024
    Review
  6. Article
  7. Article
  8. Revisiting the female germline cell development.Frontiers in plant science · 2024
    Review
  9. Article
  10. Article
  11. Article
  12. Transcriptomic Analysis of Radish (Plants (Basel, Switzerland) · 2022
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Daniel Rodríguez-LealGrupo de Desarrollo Reproductivo y Apomixis, Laboratorio Nacional de Genómica para la Biodiversidad y Departamento de Ingeniería Genética de Plantas, Cinvestav Irapuato CP36821 Guanajuato, Mexico.
Gloria León-MartínezCentro Interdisciplinario de Investigación para el Desarrollo Integral Regional del Instituto Politécnico Nacional, Unidad Michoacán, CP 59510 Jiquilpan, Mexico.
Ursula Abad-ViveroGrupo de Desarrollo Reproductivo y Apomixis, Laboratorio Nacional de Genómica para la Biodiversidad y Departamento de Ingeniería Genética de Plantas, Cinvestav Irapuato CP36821 Guanajuato, Mexico.
Jean-Philippe Vielle-CalzadaGrupo de Desarrollo Reproductivo y Apomixis, Laboratorio Nacional de Genómica para la Biodiversidad y Departamento de Ingeniería Genética de Plantas, Cinvestav Irapuato CP36821 Guanajuato, Mexico vielle@ira.cinvestav.mx.
Instituto Nacional de Cancerología · MXInstituto Politécnico Nacional · MX

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

In angiosperms, the transition to the female gametophytic phase relies on the specification of premeiotic gamete precursors from sporophytic cells in the ovule. In Arabidopsis thaliana, a single diploid cell is specified as the premeiotic female gamete precursor. Here, we show that ecotypes of Arabidopsis exhibit differences in megasporogenesis leading to phenotypes reminiscent of defects in dominant mutations that epigenetically affect the specification of female gamete precursors. Intraspecific hybridization and polyploidy exacerbate these defects, which segregate quantitatively in F2 populations derived from ecotypic hybrids, suggesting that multiple loci control cell specification at the onset of female meiosis. This variation in cell differentiation is influenced by the activity of ARGONAUTE9 (AGO9) and RNA-DEPENDENT RNA POLYMERASE6 (RDR6), two genes involved in epigenetic silencing that control the specification of female gamete precursors. The pattern of transcriptional regulation and localization of AGO9 varies among ecotypes, and abnormal gamete precursors in ovules defective for RDR6 share identity with ectopic gamete precursors found in selected ecotypes. Our results indicate that differences in the epigenetic control of cell specification lead to natural phenotypic variation during megasporogenesis. We propose that this mechanism could be implicated in the emergence and evolution of the reproductive alternatives that prevail in flowering plants.

Indexed as

ArabidopsisArabidopsis ProteinsArgonaute ProteinsCell DifferentiationEpigenesis, GeneticGametogenesis, PlantGene Expression Regulation, PlantRNA-Dependent RNA PolymeraseAGO9 protein, ArabidopsisArabidopsis ProteinsArgonaute ProteinsRDR6 protein, ArabidopsisRNA-Dependent RNA Polymerase

Identifiers

PMID25829442
PMCPMC4558685
OpenAlexW2153452951

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.