Evidence map›Paper›PMID 25828952›Full record

ReviewBiochimica et biophysica acta2015

Heavy atom labeled nucleotides for measurement of kinetic isotope effects.

Benjamin P Weissman, Nan-Sheng Li, Darrin York, Michael Harris, Joseph A Piccirilli

Abstract readReview
In one paragraph

Review in Biochimica et biophysica acta, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Unwinding the twister ribozyme: from structure to mechanism.Wiley interdisciplinary reviews. RNA · 2017
    Review
  7. The synthesis ofMonatshefte fur chemie · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Benjamin P WeissmanDepartment of Chemistry, University of Chicago, Chicago, IL, USA.
Nan-Sheng LiDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA.
Darrin YorkCenter for Integrative Proteomics Research, Biology at the Interface with the Mathematical and Physical Sciences (BioMaPS) Institute for Quantitative Biology, The State University of New Jersey, Piscataway, NJ, USA; Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.
Michael HarrisDepartment of Biochemistry, Case Western Reserve University School of Medicine, Cleveland, OH, USA.
Joseph A PiccirilliDepartment of Chemistry, University of Chicago, Chicago, IL, USA; Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA. Electronic address: jpicciri@uchicago.edu.
University of Chicago · USCase Western Reserve University · USRutgers, The State University of New Jersey · US

Funding

Multi-Scale Quantum Models for Ribozyme CatalysisR01GM062248 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Darrin M York · 2001 to 2026
$7.1M
Predoctoral Training Program in Chemistry & BiologyT32GM008720 · NIGMS · UNIVERSITY OF CHICAGO · PI PICCIRILLI, JOSEPH ANTHONY · 1999 to 2020
$4.7M
Mechanistic Enzymology of Phosphoryl Transfer EnzymesR01GM096000 · NIGMS · UNIVERSITY OF FLORIDA · PI HARRIS, MICHAEL E. · 2011 to 2017
$1.9M
Investigating the Catalytic Mechanism of the HDV RibozymeR01AI081987 · NIAID · UNIVERSITY OF CHICAGO · PI PICCIRILLI, JOSEPH ANTHONY · 2010 to 2014
$1.8M
Investigating the Catalytic Mechanism of the HDV RibozymeR56AI081987 · NIAID · UNIVERSITY OF CHICAGO · PI PICCIRILLI, JOSEPH ANTHONY · 2009 to 2009
$385k
NIAID NIH HHS AI081987NIAID NIH HHS R01 AI081987NIAID NIH HHS R56 AI081987NIGMS NIH HHS 5T32GM008720NIGMS NIH HHS GM062248NIGMS NIH HHS GM096000NIGMS NIH HHS R01 GM062248NIGMS NIH HHS R01 GM096000NIGMS NIH HHS T32 GM008720
6 · The paper itself

Abstract

Experimental analysis of kinetic isotope effects represents an extremely powerful approach for gaining information about the transition state structure of complex reactions not available through other methodologies. The implementation of this approach to the study of nucleic acid chemistry requires the synthesis of nucleobases and nucleotides enriched for heavy isotopes at specific positions. In this review, we highlight current approaches to the synthesis of nucleic acids enriched site specifically for heavy oxygen and nitrogen and their application in heavy atom isotope effect studies. This article is part of a special issue titled: Enzyme Transition States from Theory and Experiment.

Indexed as

Models, ChemicalIsotope LabelingKineticsMolecular StructureNitrogen IsotopesNucleic AcidsNucleotidesOxygen IsotopesNitrogen IsotopesNucleic AcidsNucleotidesOxygen IsotopesKinetic isotope effectLabeled nucleotideRibozymeRNA catalysisTransition state

Identifiers

PMID25828952
PMCPMC4584197
OpenAlexW2161812240

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.