Evidence map›Paper›PMID 25827832›Full record

ArticleBlood2015

The tumor virus landscape of AIDS-related lymphomas.

Aaron Arvey, Akinyemi I Ojesina, Chandra Sekhar Pedamallu, Gianna Ballon, Joonil Jung, Fujiko Duke, Lorenzo Leoncini, Giulia De Falco, Eric Bressman, Wayne Tam and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
4.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 86 citations in OpenAlex.

  1. Immediate Antiretroviral Therapy Reduces Risk of Infection-Related Cancer During Early HIV Infection.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2016
    Trial
  2. Epstein-Barr virus (EBV) infection causes human germinal center B cell-derived lymphomas in the absence of EBNA2 expression.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  17. Human Immunodeficiency Virus Related Non-Hodgkin's Lymphoma.Blood and lymphatic cancer : targets and therapy · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Aaron ArveyDepartment of Immunology and Microbial Pathogenesis, Memorial Sloan-Kettering Cancer Center, New York, NY;
Akinyemi I OjesinaCancer Program, Broad Institute of MIT and Harvard, Cambridge, MA; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA;ORCID http://orcid.org/0000-0003-0755-3639
Chandra Sekhar PedamalluCancer Program, Broad Institute of MIT and Harvard, Cambridge, MA; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA;
Gianna BallonDepartment of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY;
Joonil JungCancer Program, Broad Institute of MIT and Harvard, Cambridge, MA; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA;
Fujiko DukeCancer Program, Broad Institute of MIT and Harvard, Cambridge, MA; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA;
Lorenzo LeonciniDepartment of Human Pathology and Oncology, University of Siena, Siena, Italy; and.
Giulia De FalcoDepartment of Human Pathology and Oncology, University of Siena, Siena, Italy; and.
Eric BressmanDepartment of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY;
Wayne TamDepartment of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY;
Amy ChadburnDepartment of Pathology, Northwestern University, Chicago, IL.
Matthew MeyersonCancer Program, Broad Institute of MIT and Harvard, Cambridge, MA; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA;
Ethel CesarmanDepartment of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY;ORCID http://orcid.org/0000-0003-3303-6299
Broad Institute · USCornell University · USUniversity of Siena · ITMemorial Sloan Kettering Cancer Center · USNorthwestern University · US

Funding

Consortium for Advancing Management and Prevention of Cancer in People with HIVUM1CA121947 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Joseph A. Sparano · 2015 to 2026
$253.7M
AIDS and Cancer Specimen Resource (ACSR)UM1CA181255 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jeffrey Michael Bethony, Anna Coghill · 2013 to 2026
$56.7M
University of Southern CaliforniaU01CA121947 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MITSUYASU, RONALD T. · 2006 to 2014
$54.7M
An infrastructure for cancer virus discovery from next-generation sequencing dataRC2CA148317 · NCI · DANA-FARBER CANCER INST · PI MEYERSON, MATTHEW L. · 2009 to 2010
$1.6M
NCI NIH HHS 1RC2CA148317NCI NIH HHS 1UM1CA181255NCI NIH HHS RC2 CA148317NCI NIH HHS U01 CA121947NCI NIH HHS U01CA121947NCI NIH HHS UM1 CA121947NCI NIH HHS UM1 CA181255
6 · The paper itself

Abstract

Immunodeficiency dramatically increases susceptibility to cancer as a result of reduced immune surveillance and enhanced opportunities for virus-mediated oncogenesis. Although AIDS-related lymphomas (ARLs) are frequently associated with known oncogenic viruses, many cases contain no known transforming virus. To discover novel transforming viruses, we profiled a set of ARL samples using whole transcriptome sequencing. We determined that Epstein-Barr virus (EBV) was the only virus detected in the tumor samples of this cohort, suggesting that if unidentified pathogens exist in this disease, they are present in <10% of cases or undetectable by our methods. To evaluate the role of EBV in ARL pathogenesis, we analyzed viral gene expression and found highly heterogeneous patterns of viral transcription across samples. We also found significant heterogeneity of viral antigen expression across a large cohort, with many patient samples presenting with restricted type I viral latency, indicating that EBV latency proteins are under increased immunosurveillance in the post-combined antiretroviral therapies era. Furthermore, EBV infection of lymphoma cells in HIV-positive individuals was associated with a distinct host gene expression program. These findings provide insight into the joint host-virus regulatory network of primary ARL tumor samples and expand our understanding of virus-associated oncogenesis. Our findings may also have therapeutic implications, as treatment may be personalized to target specific viral and virus-associated host processes that are only present in a subset of patients.

Indexed as

Cell Transformation, ViralOncogenic VirusesCluster AnalysisCohort StudiesEpstein-Barr Virus InfectionsGene Expression ProfilingGene Expression RegulationGene Expression Regulation, ViralHerpesvirus 4, HumanHost-Pathogen InteractionsHumansLymphoma, AIDS-RelatedTumor Virus Infections

Identifiers

PMID25827832
PMCPMC4432014
OpenAlexW2048549194

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.