Evidence map›Paper›PMID 25826667›Full record

ArticleRNA biology2015

Translation attenuation via 3' terminal codon usage in bovine csn1s2 is responsible for the difference in αs2- and β-casein profile in milk.

Julie J Kim, Jaeju Yu, Jnanankur Bag, Marica Bakovic, John P Cant

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Sequencing and Characterization of αs2-Casein Gene (Animals : an open access journal from MDPI · 2023
    Article
  2. Article
  3. CompleteFrontiers in genetics · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 3 countries.

Julie J Kima Animal and Poultry Science; University of Guelph ; Guelph , Ontario , Canada.
Jaeju Yu
Jnanankur Bag
Marica Bakovic
John P Cant
Poultry Research Institute · CNAgriculture and Agri-Food Canada · CAInstitut de Biologie Moléculaire et Cellulaire · FRUniversity of Guelph · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rate of secretion of αs2-casein into bovine milk is approximately 25% of that of β-casein, yet mammary expression of their respective mRNA transcripts (csn1s2 and csn2) is not different. Our objective was to identify molecular mechanisms that explain the difference in translation efficiency between csn1s2 and csn2. Cell-free translational efficiency of csn2 was 5 times that of csn1s2. Transcripts of csn1s2 distributed into heavier polysomes than csn2 transcripts, indicating an attenuation of elongation and/or termination. Stimulatory and inhibitory effects of the 5' and 3' UTRs on translational efficiency were different with luciferase and casein sequences in the coding regions. Substituting the 5' and 3' UTRs from csn2 into csn1s2 did not improve csn1s2 translation, implicating the coding region itself in the translation difference. Deletion of a 28-codon fragment from the 3' terminus of the csn1s2 coding region, which displays codons with low correlations to cell fitness, increased translation to a par with csn2. We conclude that the usage of the last 28 codons of csn1s2 is the main regulatory element that attenuates its expression and is responsible for the differential translational expression of csn1s2 and csn2.

Indexed as

Base SequenceProtein BiosynthesisSequence Deletion3' Untranslated Regions5' Untranslated RegionsAnimalsCaseinsCattleCell-Free SystemCodonFemaleGene Expression RegulationMilkMolecular Sequence DataOpen Reading FramesPolyribosomes3' Untranslated Regions5' Untranslated RegionsCaseinsCodonProtein Isoforms40S, small ribosomal subunit60S, large ribosomal subunitAA, amino acidaaRS, aminoacyl-tRNA synthetaseaa-tRNA, aminoacyl-tRNAApaf-1, apoptosis protease activating factor 1ARE, AU-rich elementbovine caseincDNA, complementary DNAcell-free translationcoding regioncodon usageDLG1, disc large 1 ncosuppressoreEF, eukaryotic elongation factoreIF, eukaryotic initiation factoreRF, eukaryotic termination factorFMR1, fragile X mental retardation 1HRP, horseradish eroxidaseIE, inhibitory elementIRE, iron-responsive elementIRES, nternal ribosome entry siteIRP, iron-regulatory proteinm7G, 7-methylated uanidineMACT, bovine mammary epithelial cellmRNA, messenger RNAPABP, poly(A) binding proteinPAGE, polyacrylamide gel electrophoresisPCR, polymerase chain reactionPVDF, polyvinylidene fluorideqPCR, real-time polymerase chain reactionRACE, rapid amplification of cDNA endsRBP, RNA-binding proteinRRL, rabbit reticulocyte lysateRT, reverse transcriptionsAUG, start codonSDS, sodium dodecyl sulfateSE, standard errorSTR, single-stranded nucleic acid binding proteinTBS-T, Tris-buffered saline containing 0.5%TfR, transferrin receptortranslational efficiencytRNA, transfer RNATween 20uAUG, upstream start codonuntranslated regionuORF, open reading frameUTR, untranslated regionΔG, free energy

Identifiers

PMID25826667
PMCPMC4615300
OpenAlexW1525186018

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.