Evidence map›Paper›PMID 25826659›Full record

ArticleRNA biology2015

The RNA recognition motif of NIFK is required for rRNA maturation during cell cycle progression.

Wen-An Pan, Hsin-Yue Tsai, Shun-Chang Wang, Michael Hsiao, Pei-Yu Wu, Ming-Daw Tsai

Open access · hybridAbstract read
In one paragraph

Article in RNA biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 26 citations in OpenAlex.

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  16. The nucleolus, an ally, and an enemy of cancer cells.Histochemistry and cell biology · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Wen-An Pana Institute of Biological Chemistry; Academia Sinica ; Taipei , Taiwan.
Hsin-Yue Tsai
Shun-Chang Wang
Michael Hsiao
Pei-Yu Wu
Ming-Daw Tsai
Academia Sinica · TWInstitute of Biological Chemistry, Academia Sinica · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ribosome biogenesis governs protein synthesis. NIFK is transactivated by c-Myc, the key regulator of ribosome biogenesis. The biological function of human NIFK is not well established, except that it has been shown to interact with Ki67 and NPM1. Here we report that NIFK is required for cell cycle progression and participates in the ribosome biogenesis via its RNA recognition motif (RRM). We show that silencing of NIFK inhibits cell proliferation through a reversible p53-dependent G1 arrest, possibly by induction of the RPL5/RPL11-mediated nucleolar stress. Mechanistically it is the consequence of impaired maturation of 28S and 5.8S rRNA resulting from inefficient cleavage of internal transcribed spacer (ITS) 1, a critical step in the separation of pre-ribosome to small and large subunits. Complementation of NIFK silencing by mutants shows that RNA-binding ability of RRM is essential for the pre-rRNA processing and G1 progression. More specifically, we validate that the RRM of NIFK preferentially binds to the 5'-region of ITS2 rRNA likely in both sequence specific and secondary structure dependent manners. Our results show how NIFK is involved in cell cycle progression through RRM-dependent pre-rRNA maturation, which could enhance our understanding of the function of NIFK in cell proliferation, and potentially also cancer and ribosomopathies.

Indexed as

Protein BiosynthesisAmino Acid SequenceBinding SitesCell Line, TumorCell ProliferationDNA, Ribosomal SpacerG1 Phase Cell Cycle CheckpointsHumansIntracellular Signaling Peptides and ProteinsMolecular Sequence DataNuclear ProteinsNucleic Acid ConformationNucleophosminNucleotide MotifsOsteoblastsProtein BindingDNA, Ribosomal SpacerIntracellular Signaling Peptides and ProteinsNIFK protein, humanNPM1 protein, humanNuclear ProteinsNucleophosminRNA PrecursorsRNA, Ribosomal, 28SRNA, Ribosomal, 5.8SRNA, Small InterferingTumor Suppressor Protein p535S RNP, 5S ribonucleoprotein particleCDK1, cyclin dependent kinase 1cell cycleDFC, dense fibrillar componentETS/ITS, external/internal transcribed spacersGSK3, glycogen synthase kinase 3Ki67Ki67FHAID, Ki67-FHA interaction domainLSU, large subunitMDM2, murine double minute 2NIFK, Nucleolar protein Interacting with the FHA domain of pKi-67NoprecipitationNPM1/B23, nucleophosminnucleolar stressPAR-CLIP, Photo-Activatable-Ribonucleoside-Enhanced Crosslinking and Immu-pre-rRNAs, rRNA precursorsREMSA, RNA electrophoresis mobility shift assayribosome biogenesisRNA recognition motifrNIFK, recombinant NIFKRNP1 and 2, ribonucleoprotein motif 1 and 2RPL5 and RPL11, large ribosomal protein 5 and 11RRM, RNA recognition motifsnoRNP, small nucleolar ribonucleoprotein

Identifiers

PMID25826659
PMCPMC4615200
OpenAlexW1644072279

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.