Evidence map›Paper›PMID 25826247›Full record

ArticleBiotechnology progress

A simplified and robust protocol for immunoglobulin expression in Escherichia coli cell-free protein synthesis systems.

Qi Cai, Jeffrey A Hanson, Alexander R Steiner, Cuong Tran, Mary Rose Masikat, Rishard Chen, James F Zawada, Aaron K Sato, Trevor J Hallam, Gang Yin

Open access · hybridAbstract read
In one paragraph

Article in Biotechnology progress. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed, 1 pooled it
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 1 synthesis or guideline pooled it, 106 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 2 countries.

Qi CaiSutro Biopharma, Inc., South San Francisco, CA, 94080.
Jeffrey A HansonSutro Biopharma, Inc., South San Francisco, CA, 94080.
Alexander R SteinerSutro Biopharma, Inc., South San Francisco, CA, 94080.
Cuong TranSutro Biopharma, Inc., South San Francisco, CA, 94080.
Mary Rose MasikatSutro Biopharma, Inc., South San Francisco, CA, 94080.
Rishard ChenSutro Biopharma, Inc., South San Francisco, CA, 94080.
James F ZawadaSutro Biopharma, Inc., South San Francisco, CA, 94080.
Aaron K SatoSutro Biopharma, Inc., South San Francisco, CA, 94080.
Trevor J HallamSutro Biopharma, Inc., South San Francisco, CA, 94080.
Gang YinSutro Biopharma, Inc., South San Francisco, CA, 94080.
Sutro Biopharma (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cell-free protein synthesis (CFPS) systems allow for robust protein expression with easy manipulation of conditions to improve protein yield and folding. Recent technological developments have significantly increased the productivity and reduced the operating costs of CFPS systems, such that they can compete with conventional in vivo protein production platforms, while also offering new routes for the discovery and production of biotherapeutics. As cell-free systems have evolved, productivity increases have commonly been obtained by addition of components to previously designed reaction mixtures without careful re-examination of the essentiality of reagents from previous generations. Here we present a systematic sensitivity analysis of the components in a conventional Escherichia coli CFPS reaction mixture to evaluate their optimal concentrations for production of the immunoglobulin G trastuzumab. We identify eight changes to the system, which result in optimal expression of trastuzumab. We find that doubling the potassium glutamate concentration, while entirely eliminating pyruvate, coenzyme A, NAD, total tRNA, folinic acid, putrescine and ammonium glutamate, results in a highly productive cell-free system with a 95% reduction in reagent costs (excluding cell-extract, plasmid, and T7 RNA polymerase made in-house). A larger panel of other proteins was also tested and all show equivalent or improved yields with our simplified system. Furthermore, we demonstrate that all of the reagents for CFPS can be combined in a single freeze-thaw stable master mix to improve reliability and ease of use. These improvements are important for the application of the CFPS system in fields such as protein engineering, high-throughput screening, and biotherapeutics.

Indexed as

Protein BiosynthesisCoenzyme ADNA-Directed RNA PolymerasesEscherichia coliGene ExpressionGlutamic AcidImmunoglobulin GLeucovorinNADPolyaminesProtein EngineeringProtein FoldingPutrescinePyruvic AcidReproducibility of ResultsRNA, Transferbacteriophage T7 RNA polymeraseCoenzyme ADNA-Directed RNA PolymerasesGlutamic AcidImmunoglobulin GLeucovorinNADPolyaminesPutrescinePyruvic AcidRNA, TransferTrastuzumabViral Proteinscell-freeexpressionIgGimmunoglobulin Gprotein synthesis

Identifiers

PMID25826247
PMCPMC5029582
OpenAlexW2036905138

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.