Evidence map›Paper›PMID 25825936›Full record

ArticleAIDS research and human retroviruses2015

Identification of Novel Recombinant Forms of Hepatitis B Virus Generated from Genotypes Ae and G in HIV-1-Positive Japanese Men Who Have Sex with Men.

Yoko Kojima, Takuya Kawahata, Haruyo Mori, Keiichi Furubayashi, Yasushi Taniguchi, Ichiro Itoda, Jun Komano

Abstract read
In one paragraph

Article in AIDS research and human retroviruses, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Circulation of DistinctJournal of clinical microbiology · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yoko Kojima1 Department of Infectious Diseases, Osaka Prefectural Institute of Public Health , Osaka, Japan .
Takuya Kawahata1 Department of Infectious Diseases, Osaka Prefectural Institute of Public Health , Osaka, Japan .
Haruyo Mori1 Department of Infectious Diseases, Osaka Prefectural Institute of Public Health , Osaka, Japan .
Keiichi Furubayashi2 Sonezaki Furubayashi Clinic , Osaka, Japan .
Yasushi Taniguchi3 Taiyuji-chou Taniguchi Clinic , Osaka, Japan .
Ichiro Itoda4 Shirakaba Clinic , Tokyo, Japan .
Jun Komano1 Department of Infectious Diseases, Osaka Prefectural Institute of Public Health , Osaka, Japan .

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rare hepatitis B virus (HBV) genotype G (HBV/G) coinfects HIV-1-positive individuals along with HBV/A and generates recombinants. However, the circulation of HBV A/G recombinants remains poorly understood. This molecular epidemiologic study examined HBV A/G recombinants in Japanese HIV-1-positive men who have sex with men (MSM). Initially, blood specimens submitted for confirmatory tests of HIV infection in Osaka and Tokyo, Japan, from 2006 to 2013 were examined for HIV-1, and HIV-1-positive specimens were screened for HBV. Among 817 specimens from HIV-1-positive individuals, HBsAg was detected in 59 specimens; of these, HBV/Ae (alternatively A2), a subgenotype of HBV/A prevalent in Europe and North America, was identified in 70.2%, HBV/C in 17.5%, and HBV/G in 10.5%, and HBV/E in 1.8% according to the core gene sequence. The full-length genome analysis of HBV was performed on HBV/G-positive specimens because some HBV A/G recombinants were historically overlooked by genotyping based on a partial genome analysis. It revealed that five of the specimens contained novel Ae/G recombinants, the core gene of which had a high sequence similarity to HBV/G. Detailed analyses showed that novel recombinants were coinfected with HBV/Ae in a recombinant-dominant fashion. No major drug-resistant mutations were found in the newly identified HBV Ae/G recombinants. Some of the individuals asymptomatically coinfected with HIV/HBV suffered mild liver injury. This study demonstrated that novel Ae/G HBV recombinants were identified in Japanese HIV-1-positive MSM. The pathogenicity of novel HBV Ae/G recombinants should be examined in a future longitudinal study. Surveillance of such viruses in HIV-1-positive individuals should be emphasized.

Indexed as

GenotypeRecombination, GeneticAdultAsian PeopleDNA, ViralGenome, ViralHepatitis BHepatitis B virusHIV-1HIV InfectionsHomosexuality, MaleHumansJapanLongitudinal StudiesMaleMolecular EpidemiologyDNA, Viral

Identifiers

PMID25825936
PMCPMC4505769

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.