Evidence map›Paper›PMID 25825767›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Metabolic connectivity as a driver of host and endosymbiont integration.

Slim Karkar, Fabio Facchinelli, Dana C Price, Andreas P M Weber, Debashish Bhattacharya

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 49 citations in OpenAlex.

  1. Review
  2. Article
  3. Dating the Origin and Spread of Plastids and Chromatophores.International journal of molecular sciences · 2025
    Article
  4. Evidence of a putative COEnvironmental microbiology reports · 2024
    Article
  5. TheeLife · 2024
    Article
  6. Review
  7. Co-option of a conserved host glutamine transporter facilitates aphid/Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Why is primary endosymbiosis so rare?The New phytologist · 2021
    Review
  12. Cytoklepty in the plankton: A host strategy to optimize the bioenergetic machinery of endosymbiotic algae.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Symbiosis becoming permanent: Survival of the luckiest.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Slim KarkarDepartment of Ecology, Evolution, and Natural Resources, Rutgers University, New Brunswick, NJ 08901; and.
Fabio FacchinelliInstitut für Biochemie der Pflanzen, Cluster of Excellence on Plant Sciences, Heinrich-Heine Universität, D-40225 Düsseldorf, Germany.
Dana C PriceDepartment of Ecology, Evolution, and Natural Resources, Rutgers University, New Brunswick, NJ 08901; and.
Andreas P M WeberInstitut für Biochemie der Pflanzen, Cluster of Excellence on Plant Sciences, Heinrich-Heine Universität, D-40225 Düsseldorf, Germany andreas.weber@uni-duesseldorf.de debash.bhattacharya@gmail.com.
Debashish BhattacharyaDepartment of Ecology, Evolution, and Natural Resources, Rutgers University, New Brunswick, NJ 08901; and andreas.weber@uni-duesseldorf.de debash.bhattacharya@gmail.com.
Rutgers, The State University of New Jersey · USCluster of Excellence on Plant Sciences · DEHeinrich Heine University Düsseldorf · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The origin of oxygenic photosynthesis in the Archaeplastida common ancestor was foundational for the evolution of multicellular life. It is very likely that the primary endosymbiosis that explains plastid origin relied initially on the establishment of a metabolic connection between the host cell and captured cyanobacterium. We posit that these connections were derived primarily from existing host-derived components. To test this idea, we used phylogenomic and network analysis to infer the phylogenetic origin and evolutionary history of 37 validated plastid innermost membrane (permeome) metabolite transporters from the model plant Arabidopsis thaliana. Our results show that 57% of these transporter genes are of eukaryotic origin and that the captured cyanobacterium made a relatively minor (albeit important) contribution to the process. We also tested the hypothesis that the bacterium-derived hexose-phosphate transporter UhpC might have been the primordial sugar transporter in the Archaeplastida ancestor. Bioinformatic and protein localization studies demonstrate that this protein in the extremophilic red algae Galdieria sulphuraria and Cyanidioschyzon merolae are plastid targeted. Given this protein is also localized in plastids in the glaucophyte alga Cyanophora paradoxa, we suggest it played a crucial role in early plastid endosymbiosis by connecting the endosymbiont and host carbon storage networks. In summary, our work significantly advances understanding of plastid integration and favors a host-centric view of endosymbiosis. Under this view, nuclear genes of either eukaryotic or bacterial (noncyanobacterial) origin provided key elements of the toolkit needed for establishing metabolic connections in the primordial Archaeplastida lineage.

Indexed as

Biological EvolutionArabidopsisBiological TransportComputational BiologyEvolution, MolecularOxidation-ReductionPhotosynthesisPhylogenyPlastidsRhodophytaSymbiosisArabidopsis thalianaendosymbiosisevolutionnetwork analysissymbiont integration

Identifiers

PMID25825767
PMCPMC4547263
OpenAlexW2170282836

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.