Evidence map›Paper›PMID 25825665›Full record

ArticleHealth information science and systems2014

Design and implementation of Metta, a metasearch engine for biomedical literature retrieval intended for systematic reviewers.

Neil R Smalheiser, Can Lin, Lifeng Jia, Yu Jiang, Aaron M Cohen, Clement Yu, John M Davis, Clive E Adams, Marian S McDonagh, Weiyi Meng

Abstract read
In one paragraph

Article in Health information science and systems, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Article
  5. Article
  6. A probabilistic automated tagger to identify human-related publications.Database : the journal of biological databases and curation · 2018
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Biocuration with insufficient resources and fixed timelines.Database : the journal of biological databases and curation · 2015
    Article
  12. Review
  13. Article
  14. Rule-based deduplication of article records from bibliographic databases.Database : the journal of biological databases and curation · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Neil R SmalheiserDepartment of Psychiatry and Psychiatric Institute, University of Illinois at Chicago, Chicago, IL 60612 USA.
Can LinDepartment of Computer Science, Binghamton University, Binghamton, NY USA.
Lifeng JiaDepartment of Computer Science, University of Illinois at Chicago, Chicago, IL 60612 USA.
Yu JiangDepartment of Computer Science, Binghamton University, Binghamton, NY USA.
Aaron M CohenDepartment of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, OR USA.
Clement YuDepartment of Computer Science, University of Illinois at Chicago, Chicago, IL 60612 USA.
John M DavisDepartment of Psychiatry and Psychiatric Institute, University of Illinois at Chicago, Chicago, IL 60612 USA.
Clive E AdamsDivision of Psychiatry, University of Nottingham, Nottingham, UK.
Marian S McDonaghDepartment of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, OR USA.
Weiyi MengDepartment of Computer Science, Binghamton University, Binghamton, NY USA.

Funding

Text Mining Pipeline to Accelerate Systematic Reviews in Evidence-Based MedicineR01LM010817 · NLM · UNIVERSITY OF ILLINOIS AT CHICAGO · PI COHEN, AARON M., SMALHEISER, NEIL R · 2010 to 2019
$4.5M
NLM NIH HHS R01 LM010817
6 · The paper itself

Abstract

backgroundIndividuals and groups who write systematic reviews and meta-analyses in evidence-based medicine regularly carry out literature searches across multiple search engines linked to different bibliographic databases, and thus have an urgent need for a suitable metasearch engine to save time spent on repeated searches and to remove duplicate publications from initial consideration. Unlike general users who generally carry out searches to find a few highly relevant (or highly recent) articles, systematic reviewers seek to obtain a comprehensive set of articles on a given topic, satisfying specific criteria. This creates special requirements and challenges for metasearch engine design and implementation.

methodsWe created a federated search tool that is connected to five databases: PubMed, EMBASE, CINAHL, PsycINFO, and the Cochrane Central Register of Controlled Trials. Retrieved bibliographic records were shown online; optionally, results could be de-duplicated and exported in both BibTex and XML format.

resultsThe query interface was extensively modified in response to feedback from users within our team. Besides a general search track and one focused on human-related articles, we also added search tracks optimized to identify case reports and systematic reviews. Although users could modify preset search options, they were rarely if ever altered in practice. Up to several thousand retrieved records could be exported within a few minutes. De-duplication of records returned from multiple databases was carried out in a prioritized fashion that favored retaining citations returned from PubMed.

conclusionsSystematic reviewers are used to formulating complex queries using strategies and search tags that are specific for individual databases. Metta offers a different approach that may save substantial time but which requires modification of current search strategies and better indexing of randomized controlled trial articles. We envision Metta as one piece of a multi-tool pipeline that will assist systematic reviewers in retrieving, filtering and assessing publications. As such, Metta may find wide utility for anyone who is carrying out a comprehensive search of the biomedical literature.

Indexed as

BibliometricsEvidence-based medicineInformation retrievalMedical informaticsMeta-analysisMetasearch engineSystematic reviews

Identifiers

PMID25825665
PMCPMC4375844

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.