Evidence map›Paper›PMID 25824154›Full record

ArticleNature communications2015

Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.

Lucy A Weinert, Roy R Chaudhuri, Jinhong Wang, Sarah E Peters, Jukka Corander, Thibaut Jombart, Abiyad Baig, Kate J Howell, Minna Vehkala, Niko Välimäki and 17 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 114 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed, 1 pooled it
16.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 1 synthesis or guideline pooled it, 192 citations in OpenAlex.

  1. Identification ofVirulence · 2021
    Pooled it
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  8. Genomic characterization and phylogenetic analysis of a clinicalFrontiers in cellular and infection microbiology · 2026
    Article
  9. Article
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  12. Article
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  14. Article
  15. Article
  16. Genomic analysis and virulence of human Streptococcus suis serotype 14.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2025
    Article
  17. Article
  18. Article
  19. Article
  20. Isolation of phages infecting the zoonotic pathogenbioRxiv : the preprint server for biology · 2025
    Article

54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

27 authors at 14 institutions in 4 countries.

Lucy A WeinertDepartment of Veterinary Medicine, University of Cambridge, Cambridge CB3 0ES, UK.
Roy R ChaudhuriDepartment of Molecular Biology and Biotechnology, University of Sheffield, Sheffield S10 2TN, UK.
Jinhong WangDepartment of Veterinary Medicine, University of Cambridge, Cambridge CB3 0ES, UK.
Sarah E PetersDepartment of Veterinary Medicine, University of Cambridge, Cambridge CB3 0ES, UK.
Jukka CoranderDepartment of Mathematics and Statistics, University of Helsinki, Helsinki 00100, Finland.
Thibaut JombartMRC Centre for Outbreak Analysis and Modelling, Department of Infectious Disease Epidemiology, Faculty of Medicine, London W2 1PG, UK.
Abiyad BaigDepartment of Veterinary Medicine, University of Cambridge, Cambridge CB3 0ES, UK.
Kate J HowellDepartment of Veterinary Medicine, University of Cambridge, Cambridge CB3 0ES, UK.
Minna VehkalaDepartment of Mathematics and Statistics, University of Helsinki, Helsinki 00100, Finland.
Niko VälimäkiDepartment of Computer Science, University of Helsinki, Helsinki 00100, Finland.
David HarrisThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.
Tran Thi Bich ChieuOxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Hospital for Tropical Diseases, Quan 5, Ho Chi Minh City, Vietnam.
Nguyen Van Vinh ChauHospital for Tropical Diseases, Quan 5, Ho Chi Minh City, Vietnam.
James Campbell1] Oxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Hospital for Tropical Diseases, Quan 5, Ho Chi Minh City, Vietnam [2] Centre for Tropical Medicine, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7LJ, UK.
Constance SchultszDepartment of Global Health-Amsterdam Institute for Global Health and Development, Academic Medical Centre, University of Amsterdam, Amsterdam 1100 DE, The Netherlands.
Julian ParkhillThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.ORCID 0000000270695958
Stephen D BentleyThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.
Paul R LangfordSection of Paediatrics, Faculty of Medicine, Imperial College London, London W2 1PG, UK.
Andrew N RycroftThe Royal Veterinary College, Hawkshead Campus, Hertfordshire AL9 7TA, UK.
Brendan W WrenFaculty of Infectious &Tropical Diseases, London School of Hygiene &Tropical Medicine, London WC1E 7HT, UK.
Jeremy Farrar1] Oxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Hospital for Tropical Diseases, Quan 5, Ho Chi Minh City, Vietnam [2] Centre for Tropical Medicine, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7LJ, UK.
Stephen Baker1] Oxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Hospital for Tropical Diseases, Quan 5, Ho Chi Minh City, Vietnam [2] Centre for Tropical Medicine, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7LJ, UK [3] Faculty of Infectious &Tropical Diseases, London School of Hygiene &Tropical Medicine, London WC1E 7HT, UK.
Ngo Thi Hoa1] Oxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Hospital for Tropical Diseases, Quan 5, Ho Chi Minh City, Vietnam [2] Centre for Tropical Medicine, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7LJ, UK.
Matthew T G HoldenThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.
Alexander W TuckerDepartment of Veterinary Medicine, University of Cambridge, Cambridge CB3 0ES, UK.
Duncan J MaskellDepartment of Veterinary Medicine, University of Cambridge, Cambridge CB3 0ES, UK.
BRaDP1T Consortium
University of Cambridge · GBImperial College London · GBWellcome Sanger Institute · GBOxford University Clinical Research Unit · VNRoyal Veterinary College · GBStatistics Finland · FIUniversity of Oxford · GBAmsterdam Institute for Global Health and Development · NLHospital for Tropical Diseases · VNLondon School of Hygiene & Tropical Medicine · GBMRC Epidemiology Unit · GBUniversity of Helsinki · FIUniversity of London · GBUniversity of Sheffield · GB

Funding

Biotechnology and Biological Sciences Research Council BB/G003203/1Biotechnology and Biological Sciences Research Council BB/G018553/1Biotechnology and Biological Sciences Research Council BB/G019177/1Biotechnology and Biological Sciences Research Council BB/G019274/1Biotechnology and Biological Sciences Research Council BB/G020744/1Medical Research Council MR/K010174/1Wellcome Trust 089276Wellcome Trust 089276/Z/09/ZWellcome Trust 100087Wellcome Trust 100891Wellcome Trust WT/093724/Z/10/Z
6 · The paper itself

Abstract

Streptococcus suis causes disease in pigs worldwide and is increasingly implicated in zoonotic disease in East and South-East Asia. To understand the genetic basis of disease in S. suis, we study the genomes of 375 isolates with detailed clinical phenotypes from pigs and humans from the United Kingdom and Vietnam. Here, we show that isolates associated with disease contain substantially fewer genes than non-clinical isolates, but are more likely to encode virulence factors. Human disease isolates are limited to a single-virulent population, originating in the 1920, s when pig production was intensified, but no consistent genomic differences between pig and human isolates are observed. There is little geographical clustering of different S. suis subpopulations, and the bacterium undergoes high rates of recombination, implying that an increase in virulence anywhere in the world could have a global impact over a short timescale.

Indexed as

AnimalsGenetic VariationGenomicsHumansStreptococcal InfectionsStreptococcus suisSus scrofaSwineSwine DiseasesUnited KingdomVietnamVirulence FactorsVirulence Factors

Identifiers

PMID25824154
PMCPMC4389249
OpenAlexW4320301317

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.