Evidence map›Paper›PMID 25822521›Full record

ArticlePloS one2015

An efficiently cleaved HIV-1 clade C Env selectively binds to neutralizing antibodies.

Saikat Boliar, Supratik Das, Manish Bansal, Brihaspati N Shukla, Shilpa Patil, Tripti Shrivastava, Sweety Samal, Sandeep Goswami, C Richter King, Jayanta Bhattacharya and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Saikat BoliarTHSTI-IAVI HIV Vaccine Design Program, Translational Health Science and Technology Institute, 496 Udyog Vihar, Phase-III, Gurgaon-122 016, Haryana, India.
Supratik DasTHSTI-IAVI HIV Vaccine Design Program, Translational Health Science and Technology Institute, 496 Udyog Vihar, Phase-III, Gurgaon-122 016, Haryana, India.
Manish BansalTHSTI-IAVI HIV Vaccine Design Program, Translational Health Science and Technology Institute, 496 Udyog Vihar, Phase-III, Gurgaon-122 016, Haryana, India.
Brihaspati N ShuklaTHSTI-IAVI HIV Vaccine Design Program, Translational Health Science and Technology Institute, 496 Udyog Vihar, Phase-III, Gurgaon-122 016, Haryana, India.
Shilpa PatilTHSTI-IAVI HIV Vaccine Design Program, Translational Health Science and Technology Institute, 496 Udyog Vihar, Phase-III, Gurgaon-122 016, Haryana, India.
Tripti ShrivastavaTHSTI-IAVI HIV Vaccine Design Program, Translational Health Science and Technology Institute, 496 Udyog Vihar, Phase-III, Gurgaon-122 016, Haryana, India.
Sweety SamalTHSTI-IAVI HIV Vaccine Design Program, Translational Health Science and Technology Institute, 496 Udyog Vihar, Phase-III, Gurgaon-122 016, Haryana, India.
Sandeep GoswamiTHSTI-IAVI HIV Vaccine Design Program, Translational Health Science and Technology Institute, 496 Udyog Vihar, Phase-III, Gurgaon-122 016, Haryana, India.
C Richter KingIAVI Vaccine Design, New York, NY, United States of America.
Jayanta BhattacharyaTHSTI-IAVI HIV Vaccine Design Program, Translational Health Science and Technology Institute, 496 Udyog Vihar, Phase-III, Gurgaon-122 016, Haryana, India.
Bimal K ChakrabartiTHSTI-IAVI HIV Vaccine Design Program, Translational Health Science and Technology Institute, 496 Udyog Vihar, Phase-III, Gurgaon-122 016, Haryana, India.
Translational Health Science and Technology Institute · INInternational AIDS Vaccine Initiative · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An ideal HIV-1 Env immunogen is expected to mimic the native trimeric conformation for inducing broadly neutralizing antibody responses. The native conformation is dependent on efficient cleavage of HIV-1 Env. The clade B isolate, JRFL Env is efficiently cleaved when expressed on the cell surface. Here, for the first time, we report the identification of a native clade C Env, 4-2.J41 that is naturally and efficiently cleaved on the cell surface as confirmed by its biochemical and antigenic characteristics. In addition to binding to several conformation-dependent neutralizing antibodies, 4-2.J41 Env binds efficiently to the cleavage-dependent antibody PGT151; thus validating its native cleaved conformation. In contrast, 4-2.J41 Env occludes non-neutralizing epitopes. The cytoplasmic-tail of 4-2.J41 Env plays an important role in maintaining its conformation. Furthermore, codon optimization of 4-2.J41 Env sequence significantly increases its expression while retaining its native conformation. Since clade C of HIV-1 is the prevalent subtype, identification and characterization of this efficiently cleaved Env would provide a platform for rational immunogen design.

Indexed as

Antibody SpecificityProteolysisAIDS VaccinesAntibodies, NeutralizingCD4 AntigensCodonenv Gene Products, Human Immunodeficiency VirusEpitopesHEK293 CellsHIV-1HIV Envelope Protein gp120HumansMutationProtein ConformationSolubilityAIDS VaccinesAntibodies, NeutralizingCD4 AntigensCodonenv Gene Products, Human Immunodeficiency VirusEpitopesHIV Envelope Protein gp120

Identifiers

PMID25822521
PMCPMC4379091
OpenAlexW2085193999

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.