Evidence map›Paper›PMID 25821070›Full record

ArticleJournal of experimental botany2015

Seed response to strigolactone is controlled by abscisic acid-independent DNA methylation in the obligate root parasitic plant, Phelipanche ramosa L. Pomel.

Marc-Marie Lechat, Guillaume Brun, Grégory Montiel, Christophe Véronési, Philippe Simier, Séverine Thoiron, Jean-Bernard Pouvreau, Philippe Delavault

Abstract read
In one paragraph

Article in Journal of experimental botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Review
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  9. Review
  10. APlant communications · 2021
    Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Breeding maize (Plant breeding = Zeitschrift fur Pflanzenzuchtung · 2021
    Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Marc-Marie LechatLaboratoire de Biologie et Pathologie Végétales, SFR 4207 QUASAV, Université de Nantes, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France.
Guillaume BrunLaboratoire de Biologie et Pathologie Végétales, SFR 4207 QUASAV, Université de Nantes, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France.
Grégory MontielLaboratoire de Biologie et Pathologie Végétales, SFR 4207 QUASAV, Université de Nantes, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France.
Christophe VéronésiLaboratoire de Biologie et Pathologie Végétales, SFR 4207 QUASAV, Université de Nantes, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France.
Philippe SimierLaboratoire de Biologie et Pathologie Végétales, SFR 4207 QUASAV, Université de Nantes, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France.
Séverine ThoironLaboratoire de Biologie et Pathologie Végétales, SFR 4207 QUASAV, Université de Nantes, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France.
Jean-Bernard PouvreauLaboratoire de Biologie et Pathologie Végétales, SFR 4207 QUASAV, Université de Nantes, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France.
Philippe DelavaultLaboratoire de Biologie et Pathologie Végétales, SFR 4207 QUASAV, Université de Nantes, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France philippe.delavault@univ-nantes.fr.ORCID http://orcid.org/0000-0002-0189-4830

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Seed dormancy release of the obligate root parasitic plant, Phelipanche ramosa, requires a minimum 4-day conditioning period followed by stimulation by host-derived germination stimulants, such as strigolactones. Germination is then mediated by germination stimulant-dependent activation of PrCYP707A1, an abscisic acid catabolic gene. The molecular mechanisms occurring during the conditioning period that silence PrCYP707A1 expression and regulate germination stimulant response are almost unknown. Here, global DNA methylation quantification associated with pharmacological approaches and cytosine methylation analysis of the PrCYP707A1 promoter were used to investigate the modulation and possible role of DNA methylation during the conditioning period and in the PrCYP707A1 response to GR24, a synthetic strigolactone analogue. Active global DNA demethylation occurs during the conditioning period and is required for PrCYP707A1 activation by GR24 and for subsequent seed germination. Treatment with 5-azacytidine, a DNA-hypomethylating molecule, reduces the length of the conditioning period. Conversely, hydroxyurea, a hypermethylating agent, inhibits PrCYP707A1 expression and seed germination. Methylated DNA immunoprecipitation followed by PCR experiments and bisulfite sequencing revealed that DNA demethylation particularly impacts a 78-nucleotide sequence in the PrCYP707A1 promoter. The results here demonstrate that the DNA methylation status during the conditioning period plays a crucial role independently of abscisic acid in the regulation of P. ramosa seed germination by controlling the strigolactone-dependent expression of PrCYP707A1.

Indexed as

Abscisic AcidAzacitidineBase SequenceCytochrome P-450 Enzyme SystemDNA MethylationEnzyme InhibitorsEpigenesis, GeneticGerminationHydroxyureaLactonesMolecular Sequence DataOrobanchePlant DormancyPlant Growth RegulatorsPlant ProteinsPlant RootsAbscisic Acidabscisic acid 8'-hydroxylaseAzacitidineCytochrome P-450 Enzyme SystemEnzyme InhibitorsHydroxyureaLactonesPlant Growth RegulatorsPlant ProteinsstrigolBisulfite sequencingbranched broomrape (Phelipanche ramosa)DNA methylationdormancy releaseepigenetic regulationparasitic plantseed germinationstrigolactone.

Identifiers

PMID25821070
PMCPMC4449535

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.