Evidence map›Paper›PMID 25820233›Full record

ArticleBioEssays : news and reviews in molecular, cellular and developmental biology2015

Nonsense-mediated RNA decay--a switch and dial for regulating gene expression.

Jenna E Smith, Kristian E Baker

Abstract read
In one paragraph

Article in BioEssays : news and reviews in molecular, cellular and developmental biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 66 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Jenna E SmithCenter for RNA Molecular Biology, Case Western Reserve University, Cleveland, OH, USA.
Kristian E BakerCenter for RNA Molecular Biology, Case Western Reserve University, Cleveland, OH, USA.
Case Western Reserve University · US

Funding

GRADUATE TRAINING IN CELLULAR AND MOLECULAR BIOLOGYT32GM008056 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI DIEHL, JOHN ALAN, SNIDER, MARTIN D · 1985 to 2019
$7.1M
Recognition and degradation of mRNA by nonsense-mediated decayR01GM095621 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI BAKER, KRISTIAN EILEEN · 2011 to 2015
$1.5M
NIGMS NIH HHS GM095621NIGMS NIH HHS R01 GM095621NIGMS NIH HHS T32 GM008056
6 · The paper itself

Abstract

Nonsense-mediated RNA decay (NMD) represents an established quality control checkpoint for gene expression that protects cells from consequences of gene mutations and errors during RNA biogenesis that lead to premature termination during translation. Characterization of NMD-sensitive transcriptomes has revealed, however, that NMD targets not only aberrant transcripts but also a broad array of mRNA isoforms expressed from many endogenous genes. NMD is thus emerging as a master regulator that drives both fine and coarse adjustments in steady-state RNA levels in the cell. Importantly, while NMD activity is subject to autoregulation as a means to maintain homeostasis, modulation of the pathway by external cues provides a means to reprogram gene expression and drive important biological processes. Finally, the unanticipated observation that transcripts predicted to lack protein-coding capacity are also sensitive to this translation-dependent surveillance mechanism implicates NMD in regulating RNA function in new and diverse ways.

Indexed as

Nonsense Mediated mRNA DecayAnimalsCell NucleusEpigenesis, GeneticHumansProtein BiosynthesisRNA PrecursorsRNA SplicingRNA Precursorsgene regulationnoncoding RNAnonsense-mediated RNA decayquality controltranslation termination

Identifiers

PMID25820233
PMCPMC4454373
OpenAlexW1973069601

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.