Evidence map›Paper›PMID 25819955›Full record

ArticleApplied and environmental microbiology2015

Diversity of Shiga Toxin-Producing Escherichia coli (STEC) O26:H11 Strains Examined via stx Subtypes and Insertion Sites of Stx and EspK Bacteriophages.

Ludivine Bonanno, Estelle Loukiadis, Patricia Mariani-Kurkdjian, Eric Oswald, Lucille Garnier, Valérie Michel, Frédéric Auvray

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.1field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 47 citations in OpenAlex.

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  15. The Virulence ofFrontiers in cellular and infection microbiology · 2020
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  16. Antibiotic-resistantVeterinary world · 2019
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  18. Frontiers in microbiology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Ludivine BonannoUniversité Paris-Est, Anses, Laboratory for Food Safety, Department of Microbiology, Maisons-Alfort, France ACTALIA Produits Laitiers, Laboratoire de Microbiologie d'Intérêt Laitier, La Roche sur Foron, France.
Estelle LoukiadisUniversité de Lyon, VetAgro Sup, Laboratoire d'Études des Microorganismes Alimentaires Pathogènes/Laboratoire National de Référence pour les Escherichia coli y Compris les E. coli Producteurs de Shiga-Toxines, Marcy l'Etoile, France Université de Lyon, UMR 5557 Ecologie Microbienne, Université Lyon 1, CNRS, VetAgro Sup, Equipe Bactéries Pathogènes et Opportunistes, Villeurbanne, France.
Patricia Mariani-KurkdjianAssociated-National Reference Center for Escherichia coli, AP-HP, Service de Microbiologie, Hôpital Robert-Debré, Paris, France.
Eric OswaldINSERM UMR1043/CNRS UMR5282/Université Toulouse III, Centre de Physiopathologie de Toulouse Purpan (CPTP), Toulouse, France.
Lucille GarnierUniversité Paris-Est, Anses, Laboratory for Food Safety, Department of Microbiology, Maisons-Alfort, France.
Valérie MichelACTALIA Produits Laitiers, Laboratoire de Microbiologie d'Intérêt Laitier, La Roche sur Foron, France.
Frédéric AuvrayUniversité Paris-Est, Anses, Laboratory for Food Safety, Department of Microbiology, Maisons-Alfort, France frederic.auvray@anses.fr.
Centre National de la Recherche Scientifique · FRRoche (France) · FRHôpital Robert-Debré · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Shiga toxin-producing Escherichia coli (STEC) is a food-borne pathogen that may be responsible for severe human infections. Only a limited number of serotypes, including O26:H11, are involved in the majority of serious cases and outbreaks. The main virulence factors, Shiga toxins (Stx), are encoded by bacteriophages. Seventy-four STEC O26:H11 strains of various origins (including human, dairy, and cattle) were characterized for their stx subtypes and Stx phage chromosomal insertion sites. The majority of food and cattle strains possessed the stx(1a) subtype, while human strains carried mainly stx(1a) or stx(2a). The wrbA and yehV genes were the main Stx phage insertion sites in STEC O26:H11, followed distantly by yecE and sbcB. Interestingly, the occurrence of Stx phages inserted in the yecE gene was low in dairy strains. In most of the 29 stx-negative E. coli O26:H11 strains also studied here, these bacterial insertion sites were vacant. Multilocus sequence typing of 20 stx-positive or stx-negative E. coli O26:H11 strains showed that they were distributed into two phylogenetic groups defined by sequence type 21 (ST21) and ST29. Finally, an EspK-carrying phage was found inserted in the ssrA gene in the majority of the STEC O26:H11 strains but in only a minority of the stx-negative E. coli O26:H11 strains. The differences in the stx subtypes and Stx phage insertion sites observed in STEC O26:H11 according to their origin might reflect that strains circulating in cattle and foods are clonally distinct from those isolated from human patients.

Indexed as

Genetic VariationAnimalsCattleCluster AnalysisColiphagesDairy ProductsEscherichia coli InfectionsGenotypeHumansMultilocus Sequence TypingPhylogenyProphagesRecombination, GeneticSerogroupShiga-Toxigenic Escherichia coliShiga ToxinShiga Toxin

Identifiers

PMID25819955
PMCPMC4421068
OpenAlexW1688155817

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.