Evidence map›Paper›PMID 25816689›Full record

ArticlePlant biotechnology journal2016

Simple gene silencing using the trans-acting siRNA pathway.

Thomas B Jacobs, Noah J Lawler, Peter R LaFayette, Lila O Vodkin, Wayne A Parrott

Open access · bronzeAbstract read
In one paragraph

Article in Plant biotechnology journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 43 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Thomas B JacobsInstitute for Plant Breeding, Genetics and Genomics, University of Georgia, Athens, GA, USA.
Noah J LawlerCenter for Applied Genetic Technologies, University of Georgia, Athens, GA, USA.
Peter R LaFayetteCenter for Applied Genetic Technologies, University of Georgia, Athens, GA, USA.
Lila O VodkinDepartment of Crop Sciences, University of Illinois, Urbana, IL, USA.
Wayne A ParrottInstitute for Plant Breeding, Genetics and Genomics, University of Georgia, Athens, GA, USA.
University of Georgia · USUniversity of Illinois Urbana-Champaign · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In plants, particular micro-RNAs (miRNAs) induce the production of a class of small interfering RNAs (siRNA) called trans-acting siRNA (ta-siRNA) that lead to gene silencing. A single miRNA target is sufficient for the production of ta-siRNAs, which target can be incorporated into a vector to induce the production of siRNAs, and ultimately gene silencing. The term miRNA-induced gene silencing (MIGS) has been used to describe such vector systems in Arabidopsis. Several ta-siRNA loci have been identified in soybean, but, prior to this work, few of the inducing miRNAs have been experimentally validated, much less used to silence genes. Nine ta-siRNA loci and their respective miRNA targets were identified, and the abundance of the inducing miRNAs varies dramatically in different tissues. The miRNA targets were experimentally verified by silencing a transgenic GFP gene and two endogenous genes in hairy roots and transgenic plants. Small RNAs were produced in patterns consistent with the utilization of the ta-siRNA pathway. A side-by-side experiment demonstrated that MIGS is as effective at inducing gene silencing as traditional hairpin vectors in soybean hairy roots. Soybean plants transformed with MIGS vectors produced siRNAs and silencing was observed in the T1 generation. These results complement previous reports in Arabidopsis by demonstrating that MIGS is an efficient way to produce siRNAs and induce gene silencing in other species, as shown with soybean. The miRNA targets identified here are simple to incorporate into silencing vectors and offer an effective and efficient alternative to other gene silencing strategies.

Indexed as

Gene SilencingBase SequenceGenes, PlantGenetic VectorsGlycine maxGreen Fluorescent ProteinsMicroRNAsPlant RootsPlants, Genetically ModifiedReal-Time Polymerase Chain ReactionRNA, Small InterferingGreen Fluorescent ProteinsMicroRNAsRNA, Small Interferingfunctional genomicsgene silencingPlant biotechnologytransgenic crops

Identifiers

PMID25816689
PMCPMC11389014
OpenAlexW2126028211

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.