Evidence map›Paper›PMID 25816131›Full record

ArticlePloS one2015

A pulse coupled neural network segmentation algorithm for reflectance confocal images of epithelial tissue.

Meagan A Harris, Andrew N Van, Bilal H Malik, Joey M Jabbour, Kristen C Maitland

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Age-dependent changes in epidermal architecture explored using an automated image analysis algorithm on in vivo reflectance confocal microscopy images.Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI) · 2023
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  10. A novel multimodal optical imaging system for early detection of oral cancer.Oral surgery, oral medicine, oral pathology and oral radiology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Meagan A HarrisDepartment of Biomedical Engineering, Texas A&M University, College Station, TX, United States of America.
Andrew N VanDepartment of Biomedical Engineering, Texas A&M University, College Station, TX, United States of America.
Bilal H MalikDepartment of Biomedical Engineering, Texas A&M University, College Station, TX, United States of America.
Joey M JabbourDepartment of Biomedical Engineering, Texas A&M University, College Station, TX, United States of America.
Kristen C MaitlandDepartment of Biomedical Engineering, Texas A&M University, College Station, TX, United States of America.
Texas A&M University · US

Funding

Multiresolution FLIM and Reflectance Confocal Microscopy to Detect DysplasiaR01CA138653 · NCI · TEXAS ENGINEERING EXPERIMENT STATION · PI MAITLAND, KRISTEN C. · 2010 to 2014
$1.5M
NCI NIH HHS R01 CA138653
6 · The paper itself

Abstract

Automatic segmentation of nuclei in reflectance confocal microscopy images is critical for visualization and rapid quantification of nuclear-to-cytoplasmic ratio, a useful indicator of epithelial precancer. Reflectance confocal microscopy can provide three-dimensional imaging of epithelial tissue in vivo with sub-cellular resolution. Changes in nuclear density or nuclear-to-cytoplasmic ratio as a function of depth obtained from confocal images can be used to determine the presence or stage of epithelial cancers. However, low nuclear to background contrast, low resolution at greater imaging depths, and significant variation in reflectance signal of nuclei complicate segmentation required for quantification of nuclear-to-cytoplasmic ratio. Here, we present an automated segmentation method to segment nuclei in reflectance confocal images using a pulse coupled neural network algorithm, specifically a spiking cortical model, and an artificial neural network classifier. The segmentation algorithm was applied to an image model of nuclei with varying nuclear to background contrast. Greater than 90% of simulated nuclei were detected for contrast of 2.0 or greater. Confocal images of porcine and human oral mucosa were used to evaluate application to epithelial tissue. Segmentation accuracy was assessed using manual segmentation of nuclei as the gold standard.

Indexed as

AnimalsCell NucleusCytoplasmEpitheliumHumansImaging, Three-DimensionalMicroscopy, ConfocalMouth MucosaNeoplasmsSwine

Identifiers

PMID25816131
PMCPMC4376773
OpenAlexW2093333022

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.