Evidence map›Paper›PMID 25814655›Full record

ArticleHuman molecular genetics2015

Expanded GAA repeats impair FXN gene expression and reposition the FXN locus to the nuclear lamina in single cells.

Ana M Silva, Jill M Brown, Veronica J Buckle, Richard Wade-Martins, Michele M P Lufino

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
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  9. Review
  10. A new FRDA mouse model [Frontiers in neuroscience · 2023
    Article
  11. STRs: Ancient Architectures of the Genome beyond the Sequence.Journal of molecular neuroscience : MN · 2021
    Review
  12. Review
  13. Article
  14. Article
  15. Molecular Mechanisms and Therapeutics for the GAA·TTC Expansion Disease Friedreich Ataxia.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2019
    Review
  16. Article
  17. Article
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Ana M SilvaDepartment of Physiology, Anatomy and Genetics, University of Oxford, Oxford OX1 3QX, UK, Faculdade de Medicina, Universidade de Lisboa, Lisboa 1649-028, Portugal and.
Jill M BrownMedical Research Council, Molecular Haematology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, UK.
Veronica J BuckleMedical Research Council, Molecular Haematology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, UK.
Richard Wade-MartinsDepartment of Physiology, Anatomy and Genetics, University of Oxford, Oxford OX1 3QX, UK, richard.wade-martins@dpag.ox.ac.uk michele.lufino@dpag.ox.ac.uk.
Michele M P LufinoDepartment of Physiology, Anatomy and Genetics, University of Oxford, Oxford OX1 3QX, UK, richard.wade-martins@dpag.ox.ac.uk michele.lufino@dpag.ox.ac.uk.
University of Oxford · GBMedical Research Council · GB

Funding

Medical Research Council MC_PC_14131Medical Research Council MC_UU_12009/1Medical Research Council MR/M00919X/1Wellcome Trust 091911
6 · The paper itself

Abstract

Abnormally expanded DNA repeats are associated with several neurodegenerative diseases. In Friedreich's ataxia (FRDA), expanded GAA repeats in intron 1 of the frataxin gene (FXN) reduce FXN mRNA levels in averaged cell samples through a poorly understood mechanism. By visualizing FXN expression and nuclear localization in single cells, we show that GAA-expanded repeats decrease the number of FXN mRNA molecules, slow transcription, and increase FXN localization at the nuclear lamina (NL). Restoring histone acetylation reverses NL positioning. Expanded GAA-FXN loci in FRDA patient cells show increased NL localization with increased silencing of alleles and reduced transcription from alleles positioned peripherally. We also demonstrate inefficiencies in transcription initiation and elongation from the expanded GAA-FXN locus at single-cell resolution. We suggest that repressive epigenetic modifications at the expanded GAA-FXN locus may lead to NL relocation, where further repression may occur.

Indexed as

Gene ExpressionGenetic LociTrinucleotide Repeat ExpansionAllelesCell LineFrataxinGene OrderGene SilencingHumansIron-Binding ProteinsNuclear LaminaProtein TransportRNA, MessengerSingle-Cell AnalysisTranscription, GeneticTranscription Initiation, GeneticFrataxinIron-Binding ProteinsRNA, Messenger

Identifiers

PMID25814655
PMCPMC4498154
OpenAlexW2146512185

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.