Evidence map›Paper›PMID 25813846›Full record

ArticleNature communications2015

Human gephyrin is encompassed within giant functional noncoding yin-yang sequences.

Sharlee Climer, Alan R Templeton, Weixiong Zhang

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 15 citations in OpenAlex.

  1. Biomolecules · 2025
    Article
  2. The human genome harbours widespread exclusive yin yang haplotypes.European journal of human genetics : EJHG · 2024
    Article
  3. Article
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sharlee ClimerDepartment of Computer Science and Engineering, Washington University, St Louis, Missouri 63130, USA.
Alan R Templeton1] Department of Biology, Washington University, St Louis, Missouri 63130, USA [2] Department of Genetics, Washington University, St Louis, Missouri 63110, USA [3] Department of Evolutionary and Environmental Biology, University of Haifa, Haifa 31905, Israel.
Weixiong Zhang1] Department of Computer Science and Engineering, Washington University, St Louis, Missouri 63130, USA [2] Department of Genetics, Washington University, St Louis, Missouri 63110, USA [3] Institute for Systems Biology, Jianghan University, Wuhan, Hubei 430056, China.
Washington University in St. Louis · US

Funding

Variable DNA sites predicting interindividual variation in health measuresP50GM065509 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BOERWINKLE, ERIC A. · 2001 to 2011
$27.5M
A NOVEL CO-EXPRESSION NETWORK APPROACH THAT IS ROBUST TO GENETIC HETEROGENEITY ANR01GM100364 · NIGMS · WASHINGTON UNIVERSITY · PI ZHANG, WEIXIONG · 2012 to 2015
$1.2M
Systems Biology of PsoriasisRC1AR058681 · NIAMS · WASHINGTON UNIVERSITY · PI BOWCOCK, ANNE MARY, ZHANG, WEIXIONG · 2009 to 2010
$998k
GENES AND GENETIC INTERACTIONS UNDERLYING PHARMACOLOGICAL VARIATION IN YEASTR01GM086412 · NIGMS · WASHINGTON UNIVERSITY · PI FAY, JUSTIN C, ZHANG, WEIXIONG · 2009 to 2010
$547k
NIAMS NIH HHS RC1 AR058681NIAMS NIH HHS RC1-AR058681NIGMS NIH HHS P50 GM065509NIGMS NIH HHS P50-GM65509NIGMS NIH HHS R01 GM086412NIGMS NIH HHS R01-GM086412NIGMS NIH HHS R01 GM100364NIGMS NIH HHS R01-GM100364
6 · The paper itself

Abstract

Gephyrin is a highly conserved gene that is vital for the organization of proteins at inhibitory receptors, molybdenum cofactor biosynthesis and other diverse functions. Its specific function is intricately regulated and its aberrant activities have been observed for a number of human diseases. Here we report a remarkable yin-yang haplotype pattern encompassing gephyrin. Yin-yang haplotypes arise when a stretch of DNA evolves to present two disparate forms that bear differing states for nucleotide variations along their lengths. The gephyrin yin-yang pair consists of 284 divergent nucleotide states and both variants vary drastically from their mutual ancestral haplotype, suggesting rapid evolution. Several independent lines of evidence indicate strong positive selection on the region and suggest these high-frequency haplotypes represent two distinct functional mechanisms. This discovery holds potential to deepen our understanding of variable human-specific regulation of gephyrin while providing clues for rapid evolutionary events and allelic migrations buried within human history.

Indexed as

Evolution, MolecularBase SequenceCarrier ProteinsDatabases, GeneticHaplotypesHumansMembrane ProteinsCarrier ProteinsgephyrinMembrane Proteins

Identifiers

PMID25813846
PMCPMC4380243
OpenAlexW2068979990

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.