Evidence map›Paper›PMID 25813378›Full record

ArticleMolecular & cellular proteomics : MCP2015

Label-free Quantitative Proteomics Reveals a Role for the Mycobacterium tuberculosis SecA2 Pathway in Exporting Solute Binding Proteins and Mce Transporters to the Cell Wall.

Meghan E Feltcher, Harsha P Gunawardena, Katelyn E Zulauf, Seidu Malik, Jennifer E Griffin, Christopher M Sassetti, Xian Chen, Miriam Braunstein

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 62 citations in OpenAlex.

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  17. Vaccines · 2020
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  18. eLife · 2020
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  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Meghan E FeltcherFrom the ‡Department of Microbiology and Immunology.
Harsha P Gunawardena§Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, North Carolina, 27599;
Katelyn E ZulaufFrom the ‡Department of Microbiology and Immunology.
Seidu MalikFrom the ‡Department of Microbiology and Immunology.
Jennifer E Griffin¶Department of Microbiology and Physiological Systems, University of Massachusetts Medical School, Worcester, Massachusetts 01655;
Christopher M Sassetti¶Department of Microbiology and Physiological Systems, University of Massachusetts Medical School, Worcester, Massachusetts 01655; ‖Howard Hughes Medical Institute, Chevy Chase, Maryland, 20815.
Xian Chen§Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, North Carolina, 27599; braunstein@med.unc.edu xchen@email.unc.edu.
Miriam BraunsteinFrom the ‡Department of Microbiology and Immunology, braunstein@med.unc.edu xchen@email.unc.edu.
University of North Carolina at Chapel Hill · USHoward Hughes Medical Institute · USUniversity of Massachusetts Chan Medical School · US

Funding

Proteomics Pathway DiscoveryU19AI109965 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DUNCAN, JOSEPH A · 2014 to 2018
$14.9M
Tuberculosis Pathogenesis and Drug ResponseR01AI064282 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SASSETTI, CHRISTOPHER M · 2007 to 2017
$3.9M
Protein Secretion Pathways of Mycobacterium tuberculosisR01AI054540 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BRAUNSTEIN, MIRIAM S. · 2004 to 2013
$2.7M
NIAID NIH HHS AI054540NIAID NIH HHS R01 AI054540NIAID NIH HHS R01 AI064282NIAID NIH HHS U19 AI109965
6 · The paper itself

Abstract

Mycobacterium tuberculosis is an example of a bacterial pathogen with a specialized SecA2-dependent protein export system that contributes to its virulence. Our understanding of the mechanistic basis of SecA2-dependent export and the role(s) of the SecA2 pathway in M. tuberculosis pathogenesis has been hindered by our limited knowledge of the proteins exported by the pathway. Here, we set out to identify M. tuberculosis proteins that use the SecA2 pathway for their export from the bacterial cytoplasm to the cell wall. Using label-free quantitative proteomics involving spectral counting, we compared the cell wall and cytoplasmic proteomes of wild type M. tuberculosis to that of a ΔsecA2 mutant. This work revealed a role for the M. tuberculosis SecA2 pathway in the cell wall localization of solute binding proteins that work with ABC transporters to import solutes. Another discovery was a profound effect of SecA2 on the cell wall localization of the Mce1 and Mce4 lipid transporters, which contribute to M. tuberculosis virulence. In addition to the effects on solute binding proteins and Mce transporter export, our label-free quantitative analysis revealed an unexpected relationship between SecA2 and the hypoxia-induced DosR regulon, which is associated with M. tuberculosis latency. Nearly half of the transcriptionally controlled DosR regulon of cytoplasmic proteins were detected at higher levels in the ΔsecA2 mutant versus wild type M. tuberculosis. By increasing the list of M. tuberculosis proteins known to be affected by the SecA2 pathway, this study expands our appreciation of the types of proteins exported by this pathway and guides our understanding of the mechanism of SecA2-dependent protein export in mycobacteria. At the same time, the newly identified SecA2-dependent proteins are helpful for understanding the significance of this pathway to M. tuberculosis virulence and physiology.

Indexed as

Adenosine TriphosphatasesBacterial ProteinsBiological TransportCarrier ProteinsCell WallMembrane Transport ProteinsProteomicsAdenosine TriphosphatasesBacterial ProteinsCarrier Proteinsmammalian cell entry protein Mce1A, Mycobacterium tuberculosisMce4A protein, Mycobacterium tuberculosisMembrane Transport ProteinsSecA2 protein, Mycobacterium

Identifiers

PMID25813378
PMCPMC4458716
OpenAlexW2068226583

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.