Evidence map›Paper›PMID 25813344›Full record

ArticleJournal of molecular biology2015

The pentameric nucleoplasmin fold is present in Drosophila FKBP39 and a large number of chromatin-related proteins.

Christian Edlich-Muth, Jean-Baptiste Artero, Phil Callow, Marcin R Przewloka, Aleksandra A Watson, Wei Zhang, David M Glover, Janusz Debski, Michal Dadlez, Adam R Round and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of molecular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 34 citations in OpenAlex.

  1. Genome-Wide Analysis of Tea FK506-Binding Proteins (FKBPs) Reveals ThatInternational journal of molecular sciences · 2025
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  8. FKBP25 participates in DNA double-strand break repair.Biochemistry and cell biology = Biochimie et biologie cellulaire · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Christian Edlich-MuthDepartment of Biochemistry, University of Cambridge, 80 Tennis Court Road, CB2 1GA Cambridge, United Kingdom.
Jean-Baptiste ArteroLife Sciences Group, Institut Laue-Langevin, 71 Avenue des Martyrs, CS 20156, Grenoble, Cedex 9, France; Faculty of Natural Sciences, Keele University, ST5 5BG Staffordshire, United Kingdom.
Phil CallowLife Sciences Group, Institut Laue-Langevin, 71 Avenue des Martyrs, CS 20156, Grenoble, Cedex 9, France; Faculty of Natural Sciences, Keele University, ST5 5BG Staffordshire, United Kingdom.
Marcin R PrzewlokaDepartment of Genetics, University of Cambridge, Downing Street, CB2 3EH Cambridge, United Kingdom.
Aleksandra A WatsonDepartment of Biochemistry, University of Cambridge, 80 Tennis Court Road, CB2 1GA Cambridge, United Kingdom.
Wei ZhangDepartment of Biochemistry, University of Cambridge, 80 Tennis Court Road, CB2 1GA Cambridge, United Kingdom.
David M GloverDepartment of Genetics, University of Cambridge, Downing Street, CB2 3EH Cambridge, United Kingdom.
Janusz DebskiMass Spectrometry Laboratory, Department of Biophysics, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, 5A Pawinskiego Street, 02-106 Warsaw, Poland.
Michal DadlezMass Spectrometry Laboratory, Department of Biophysics, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, 5A Pawinskiego Street, 02-106 Warsaw, Poland.
Adam R RoundEuropean Molecular Biology Laboratory, Grenoble Outstation, 71 Avenue des Martyrs, 38042 Grenoble, France; Unit for Virus Host-Cell Interactions, University Grenoble Alpes-European Molecular Biology Laboratory-CNRS, 71 Avenue des Martyrs, 38042 Grenoble, France; Faculty of Natural Sciences, Keele University, ST5 5BG Staffordshire, United Kingdom.
V Trevor ForsythLife Sciences Group, Institut Laue-Langevin, 71 Avenue des Martyrs, CS 20156, Grenoble, Cedex 9, France; Faculty of Natural Sciences, Keele University, ST5 5BG Staffordshire, United Kingdom.
Ernest D LaueDepartment of Biochemistry, University of Cambridge, 80 Tennis Court Road, CB2 1GA Cambridge, United Kingdom. Electronic address: e.d.laue@bioc.cam.ac.uk.
University of Cambridge · GBInstitut Laue-Langevin · FRInstitute of Biochemistry and Biophysics, Polish Academy of Sciences · PLCentre National de la Recherche Scientifique · FR

Funding

Cancer Research UK 11431Cancer Research UK 18795Medical Research CouncilWellcome TrustWellcome Trust 082010/Z/07/ZWellcome Trust 092441/Z/10/Z
6 · The paper itself

Abstract

Nucleoplasmin is a histone chaperone that consists of a pentameric N-terminal domain and an unstructured C-terminal tail. The pentameric core domain, a doughnut-like structure with a central pore, is only found in the nucleoplasmin family. Here, we report the first structure of a nucleoplasmin-like domain (NPL) from the unrelated Drosophila protein, FKBP39, and we present evidence that this protein associates with chromatin. Furthermore, we show that two other chromatin proteins, Arabidopsis thaliana histone deacetylase type 2 (HD2) and Saccharomyces cerevisiae Fpr4, share the NPL fold and form pentamers, or a dimer of pentamers in the case of HD2. Thus, we propose a new family of proteins that share the pentameric nucleoplasmin-like NPL domain and are found in protists, fungi, plants and animals.

Indexed as

Amino Acid SequenceAnimalsArabidopsisChromatinCross-Linking ReagentsCrystallography, X-RayDrosophila melanogasterDrosophila ProteinsHistone ChaperonesHistone Deacetylase 2HistonesImmunoprecipitationModels, MolecularMolecular Sequence DataNucleoplasminsPhylogenyChromatinCross-Linking ReagentsDrosophila ProteinsFKBP39 protein, DrosophilaFpr4 protein, S cerevisiaeHistone ChaperonesHistone Deacetylase 2HistonesNucleoplasminsRecombinant ProteinsSaccharomyces cerevisiae ProteinsTacrolimus Binding ProteinsFKBPhistone chaperoneNMRnucleoplasminstructure determination

Identifiers

PMID25813344
PMCPMC4414354
OpenAlexW2058174968

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.