Evidence map›Paper›PMID 25813242›Full record

ArticleNature communications2015

Non-canonical active site architecture of the radical SAM thiamin pyrimidine synthase.

Michael K Fenwick, Angad P Mehta, Yang Zhang, Sameh H Abdelwahed, Tadhg P Begley, Steven E Ealick

Abstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. The plastidialThe Journal of biological chemistry · 2020
    Article
  8. Review
  9. Article
  10. Review
  11. Roles and maturation of iron-sulfur proteins in plastids.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2018
    Review
  12. Article
  13. Structural studies of viperin, an antiviral radical SAM enzyme.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Michael K FenwickDepartment of Chemistry and Chemical Biology, Cornell University, 120 Baker Lab, Ithaca, New York 14853, USA.
Angad P MehtaDepartment of Chemistry, Texas A&M University, College Station, Texas 77843, USA.
Yang ZhangDepartment of Chemistry and Chemical Biology, Cornell University, 120 Baker Lab, Ithaca, New York 14853, USA.
Sameh H AbdelwahedDepartment of Chemistry, Texas A&M University, College Station, Texas 77843, USA.
Tadhg P BegleyDepartment of Chemistry, Texas A&M University, College Station, Texas 77843, USA.
Steven E EalickDepartment of Chemistry and Chemical Biology, Cornell University, 120 Baker Lab, Ithaca, New York 14853, USA.

Funding

Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
Structural Studies of Enzymes of Thiamin BiosynthesisR01DK067081 · NIDDK · CORNELL UNIVERSITY ITHACA · PI EALICK, STEVEN E · 2005 to 2017
$4.2M
The mechanistic enzymology of thiamin biosynthesisR37DK044083 · NIDDK · TEXAS A&M UNIVERSITY · PI BEGLEY, TADHG P. · 2008 to 2017
$3.7M
The mechanistic enzymology of thiamin biosynthesisR01DK044083 · NIDDK · CORNELL UNIVERSITY ITHACA · PI BEGLEY, TADHG P. · 1991 to 2007
$2.5M
NIDDK NIH HHS DK44083NIDDK NIH HHS DK67081NIDDK NIH HHS R01 DK044083NIDDK NIH HHS R01 DK067081NIDDK NIH HHS R37 DK044083NIGMS NIH HHS GM103403NIGMS NIH HHS P41 GM103403
6 · The paper itself

Abstract

Radical S-adenosylmethionine (SAM) enzymes use a [4Fe-4S] cluster to generate a 5'-deoxyadenosyl radical. Canonical radical SAM enzymes are characterized by a β-barrel-like fold and SAM anchors to the differentiated iron of the cluster, which is located near the amino terminus and within the β-barrel, through its amino and carboxylate groups. Here we show that ThiC, the thiamin pyrimidine synthase in plants and bacteria, contains a tethered cluster-binding domain at its carboxy terminus that moves in and out of the active site during catalysis. In contrast to canonical radical SAM enzymes, we predict that SAM anchors to an additional active site metal through its amino and carboxylate groups. Superimposition of the catalytic domains of ThiC and glutamate mutase shows that these two enzymes share similar active site architectures, thus providing strong evidence for an evolutionary link between the radical SAM and adenosylcobalamin-dependent enzyme superfamilies.

Indexed as

Bacterial ProteinsCatalysisCatalytic DomainCobamidesCrystallography, X-RayIntramolecular TransferasesIron-Sulfur ProteinsProtein Structure, SecondaryProtein Structure, TertiaryPyrimidinesS-AdenosylmethionineThiamineBacterial ProteinscobamamideCobamidesIntramolecular TransferasesIron-Sulfur Proteinsmethylaspartate mutasepyrimidinePyrimidinesS-AdenosylmethionineThiamineThiC protein, Bacteria

Identifiers

PMID25813242
PMCPMC4389238

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.