Evidence map›Paper›PMID 25813041›Full record

ArticleNucleic acids research2015

The NEIL glycosylases remove oxidized guanine lesions from telomeric and promoter quadruplex DNA structures.

Jia Zhou, Aaron M Fleming, April M Averill, Cynthia J Burrows, Susan S Wallace

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 146 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Oxidative Stress and DNA Damage at Telomeres.Cold Spring Harbor perspectives in biology · 2025
    Review
  8. Review
  9. Article
  10. Position-Dependent Effects of AP Sites Within anInternational journal of molecular sciences · 2025
    Article
  11. Research progress on the role of the NEIL family in cancer.Frontiers in cell and developmental biology · 2025
    Review
  12. Dynamic Structures and Fast Transition Kinetics of Oxidized G-Quadruplexes.Small (Weinheim an der Bergstrasse, Germany) · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. Development of MnInternational journal of molecular sciences · 2023
    Article
  17. Article
  18. Article
  19. PromotersRSC chemical biology · 2023
    Article
  20. Review

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jia ZhouDepartment of Microbiology and Molecular Genetics, University of Vermont, Burlington, VT 05405, USA.
Aaron M FlemingDepartment of Chemistry, University of Utah, Salt Lake City, UT 84112, USA.
April M AverillDepartment of Microbiology and Molecular Genetics, University of Vermont, Burlington, VT 05405, USA.
Cynthia J BurrowsDepartment of Chemistry, University of Utah, Salt Lake City, UT 84112, USA burrows@chem.utah.edu.
Susan S WallaceDepartment of Microbiology and Molecular Genetics, University of Vermont, Burlington, VT 05405, USA susan.wallace@uvm.edu.
University of Vermont · USUniversity of Utah · US

Funding

SUBSTRATE SPECIFICITY OF THE BER OXIDATIVE DNA GLYCOSYLASESP01CA098993 · NCI · UNIVERSITY OF VERMONT &ST AGRIC COLLEGE · PI DOUBLIE, SYLVIE · 2004 to 2021
$25.9M
Chemistry and Biology of Oxidized Purine Lesions in DNAR01CA090689 · NCI · UNIVERSITY OF UTAH · PI BURROWS, CYNTHIA J, DAVID, SHEILA SUE · 2002 to 2019
$5.5M
NCI NIH HHS CA090689NCI NIH HHS P01 CA098993NCI NIH HHS R01 CA090689
6 · The paper itself

Abstract

G-quadruplex is a four-stranded G-rich DNA structure that is highly susceptible to oxidation. Despite the important roles that G-quadruplexes play in telomere biology and gene transcription, neither the impact of guanine lesions on the stability of quadruplexes nor their repair are well understood. Here, we show that the oxidized guanine lesions 8-oxo-7,8-dihydroguanine (8-oxoG), guanidinohydantoin (Gh) and spiroiminodihydantoin (Sp) reduce the thermostability and alter the folding of telomeric quadruplexes in a location-dependent manner. Also, the NEIL1 and NEIL3 DNA glycosylases can remove hydantoin lesions but none of the glycosylases, including OGG1, are able to remove 8-oxoG from telomeric quadruplexes. Interestingly, a hydantoin lesion at the site most prone to oxidation in quadruplex DNA is not efficiently removed by NEIL1 or NEIL3. However, NEIL1, NEIL2 and NEIL3 remove hydantoins from telomeric quadruplexes formed by five TTAGGG repeats much more rapidly than the commonly studied four-repeat quadruplex structures. We also show that APE1 cleaves furan in selected positions in Na(+)-coordinated telomeric quadruplexes. In promoter G-quadruplex DNA, the NEIL glycosylases primarily remove Gh from Na(+)-coordinated antiparallel quadruplexes but not K(+)-coordinated parallel quadruplexes containing VEGF or c-MYC promoter sequences. Thus, the NEIL DNA glycosylases may be involved in both telomere maintenance and in gene regulation.

Indexed as

G-QuadruplexesPromoter Regions, GeneticDNADNA-(Apurinic or Apyrimidinic Site) LyaseDNA GlycosylasesFuransGuanidinesGuanineGuanosineHumansHydantoinsN-Glycosyl HydrolasesOxidation-ReductionPotassiumSodiumSpiro Compounds8-hydroxyguanineDNADNA-(Apurinic or Apyrimidinic Site) LyaseDNA GlycosylasesFuransGuanidinesguanidinohydantoinGuanineGuanosineHydantoinsNEIL3 protein, humanN-Glycosyl HydrolasesPotassiumSodiumSpiro Compoundsspiroiminodihydantointriplex DNA

Identifiers

PMID25813041
PMCPMC4417164
OpenAlexW2021711239

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.