Evidence map›Paper›PMID 25811864›Full record

ArticlePloS one2015

Characterization of the Xylella fastidiosa PD1671 gene encoding degenerate c-di-GMP GGDEF/EAL domains, and its role in the development of Pierce's disease.

Luciana Cursino, Dusit Athinuwat, Kelly R Patel, Cheryl D Galvani, Paulo A Zaini, Yaxin Li, Leonardo De La Fuente, Harvey C Hoch, Thomas J Burr, Patricia Mowery

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Update of a database of host plants of Xylella fastidiosa: 20 November 2015.EFSA journal. European Food Safety Authority · 2016
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Luciana CursinoDepartment of Plant Pathology and Plant Microbe Biology, Cornell University, New York State Agricultural Experiment Station, Geneva, New York, United States of America; Department of Biology, Hobart and William Smith Colleges Geneva, New York, United States of America.
Dusit AthinuwatDepartment of Plant Pathology and Plant Microbe Biology, Cornell University, New York State Agricultural Experiment Station, Geneva, New York, United States of America.
Kelly R PatelDepartment of Biology, Hobart and William Smith Colleges Geneva, New York, United States of America.
Cheryl D GalvaniDepartment of Plant Pathology and Plant Microbe Biology, Cornell University, New York State Agricultural Experiment Station, Geneva, New York, United States of America; Department of Biology, Hobart and William Smith Colleges Geneva, New York, United States of America.
Paulo A ZainiDepartment of Plant Pathology and Plant Microbe Biology, Cornell University, New York State Agricultural Experiment Station, Geneva, New York, United States of America.
Yaxin LiDepartment of Plant Pathology and Plant Microbe Biology, Cornell University, New York State Agricultural Experiment Station, Geneva, New York, United States of America.
Leonardo De La FuenteDepartment of Plant Pathology and Plant Microbe Biology, Cornell University, New York State Agricultural Experiment Station, Geneva, New York, United States of America.
Harvey C HochDepartment of Plant Pathology and Plant Microbe Biology, Cornell University, New York State Agricultural Experiment Station, Geneva, New York, United States of America.
Thomas J BurrDepartment of Plant Pathology and Plant Microbe Biology, Cornell University, New York State Agricultural Experiment Station, Geneva, New York, United States of America.
Patricia MoweryDepartment of Biology, Hobart and William Smith Colleges Geneva, New York, United States of America.
New York State Department of Agriculture and Markets · USCornell University · USHobart and William Smith Colleges · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Xylella fastidiosa is an important phytopathogenic bacterium that causes many serious plant diseases including Pierce's disease of grapevines. X. fastidiosa is thought to induce disease by colonizing and clogging xylem vessels through the formation of cell aggregates and bacterial biofilms. Here we examine the role in X. fastidiosa virulence of an uncharacterized gene, PD1671, annotated as a two-component response regulator with potential GGDEF and EAL domains. GGDEF domains are found in c-di-GMP diguanylate cyclases while EAL domains are found in phosphodiesterases, and these domains are for c-di-GMP production and turnover, respectively. Functional analysis of the PD1671 gene revealed that it affected multiple X. fastidiosa virulence-related phenotypes. A Tn5 PD1671 mutant had a hypervirulent phenotype in grapevines presumably due to enhanced expression of gum genes leading to increased exopolysaccharide levels that resulted in elevated biofilm formation. Interestingly, the PD1671 mutant also had decreased motility in vitro but did not show a reduced distribution in grapevines following inoculation. Given these responses, the putative PD1671 protein may be a negative regulator of X. fastidiosa virulence.

Indexed as

Amino Acid SequenceBacterial ProteinsBiofilmsCyclic GMPExtracellular SpaceGene Expression Regulation, BacterialMolecular Sequence DataMutationPlant DiseasesPolymersProtein Interaction Domains and MotifsSequence AlignmentVirulenceXylellaBacterial Proteinsbis(3',5')-cyclic diguanylic acidCyclic GMPPolymers

Identifiers

PMID25811864
PMCPMC4374697
OpenAlexW1968264700

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.