Evidence map›Paper›PMID 25811360›Full record

ArticlePloS one2015

Site-specific differences in T cell frequencies and phenotypes in the blood and gut of HIV-uninfected and ART-treated HIV+ adults.

Steven A Yukl, Amandeep K Shergill, Valerie Girling, Qingsheng Li, Maudi Killian, Lorrie Epling, Peilin Li, Philipp Kaiser, Ashley Haase, Diane V Havlir and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 41 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Review
  4. Article
  5. Altered mucosal immunity in HIV-positive colon adenoma: decreased CD4International journal of clinical oncology · 2022
    Article
  6. Article
  7. Article
  8. Article
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  11. Article
  12. Article
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  14. Article
  15. Intestinal CD4 Depletion in HIV / SIV Infection.Current immunology reviews · 2019
    Article
  16. HIV Disease Progression: Overexpression of the Ectoenzyme CD38 as a Contributory Factor?BioEssays : news and reviews in molecular, cellular and developmental biology · 2019
    Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Steven A YuklDepartment of Medicine, San Francisco VA Medical Center, San Francisco, California, United States of America; Department of Medicine, University of California, San Francisco (UCSF), San Francisco, California, United States of America.
Amandeep K ShergillDepartment of Medicine, San Francisco VA Medical Center, San Francisco, California, United States of America; Department of Medicine, University of California, San Francisco (UCSF), San Francisco, California, United States of America.
Valerie GirlingDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, California, United States of America.
Qingsheng LiSchool of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, United States of America.
Maudi KillianDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, California, United States of America.
Lorrie EplingDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, California, United States of America.
Peilin LiDepartment of Medicine, San Francisco VA Medical Center, San Francisco, California, United States of America; Department of Medicine, University of California, San Francisco (UCSF), San Francisco, California, United States of America.
Philipp KaiserDepartment of Medicine, San Francisco VA Medical Center, San Francisco, California, United States of America; Department of Medicine, University of California, San Francisco (UCSF), San Francisco, California, United States of America.
Ashley HaaseDepartment of Microbiology, University of Minnesota, Minneapolis, Minnesota, United States of America.
Diane V HavlirDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, California, United States of America.
Kenneth McQuaidDepartment of Medicine, San Francisco VA Medical Center, San Francisco, California, United States of America; Department of Medicine, University of California, San Francisco (UCSF), San Francisco, California, United States of America.
Elizabeth SinclairDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, California, United States of America.
Joseph K WongDepartment of Medicine, San Francisco VA Medical Center, San Francisco, California, United States of America; Department of Medicine, University of California, San Francisco (UCSF), San Francisco, California, United States of America.
University of California, San Francisco · USUniversity of Minnesota · USUniversity of Nebraska–Lincoln · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
Viral reservoirs and sanctuaries in HAART - treated patients: role and mechanismsU19AI096109 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEEKS, STEVEN GRANT · 2011 to 2015
$29.5M
Role of Gut Associated Lymphoid Tissue in HIV PersistenceR56AI091573 · NIAID · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI WONG, JOSEPH K · 2011 to 2011
$643k
Effects of Acitretin on the activation of latent HIVR21AI104445 · NIAID · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI LI, PEILIN · 2013 to 2014
$410k
Quantification of HIV Reservoirs in the Gut-Associated Lymphatic SystemIK2CX000520 · VA · VETERANS AFFAIRS MED CTR SAN FRANCISCO · PI YUKL, STEVEN A · 2011 to 2015
–
CSRD VA IK2 CX000520NIAID NIH HHS 1R21AI104445-01A1NIAID NIH HHS P30 AI027763NIAID NIH HHS P30-AI027763NIAID NIH HHS R21 AI104445NIAID NIH HHS R56 AI091573NIAID NIH HHS R56AI091573NIAID NIH HHS U19 AI096109NIAID NIH HHS U19AI096109
6 · The paper itself

Abstract

Gastrointestinal T lymphocytes are critical for mucosal immunity and HIV pathogenesis, yet little is known about normal T cell numbers and phenotypes in different regions of the gut, or the degree to which ART can restore levels to those of HIV-uninfected individuals. To investigate these questions, we measured T cell frequencies and markers of memory, activation, anergy, and homing in the blood, ileum, and rectum of HIV- and ART-suppressed HIV+ adults. In HIV- individuals, T cell frequencies and phenotypes differed significantly between sites. Compared to HIV- adults, HIV+ adults had lower absolute CD4+T cell counts in the ileal lamina propria and lower relative CD4+T cell counts in the blood and ileum. In the gut, HIV+ adults had a higher proportion of CD38+ CD4+T cells, a lower proportion of terminally-differentiated effector cells, and, in the rectum, a higher proportion of CTLA-4+ CD4+T cells. In HIV+ individuals, relative CD4+T cell numbers in the ileum correlated with the proportion of CTLA-4+ CD4+T cells, whereas in the rectum, they tended to correlate with the proportion of circulating CD4+T cells expressing α4β7 or CCR6. Mechanisms of T cell reconstitution may differ throughout the gut, with homing contributing more in the rectum while ileal reconstitution is associated with mucosal CD4+T cell anergy.

Indexed as

ImmunophenotypingLymphocyte CountAdultAgedAntiretroviral Therapy, Highly ActiveBiomarkersGastrointestinal TractHIV-1HIV InfectionsHumansImmunity, MucosalImmunohistochemistryIntestinal MucosaLymphocyte ActivationMaleMiddle AgedBiomarkers

Identifiers

PMID25811360
PMCPMC4374729
OpenAlexW1982204706

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.