Evidence map›Paper›PMID 25811180›Full record

ArticlePloS one2015

Modulators of hepatic lipoprotein metabolism identified in a search for small-molecule inducers of tribbles pseudokinase 1 expression.

Marek M Nagiec, Adam P Skepner, Joseph Negri, Michelle Eichhorn, Nicolas Kuperwasser, Eamon Comer, Giovanni Muncipinto, Aravind Subramanian, Clary Clish, Kiran Musunuru and 4 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
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  11. Novel tricyclic glycal-basedMedChemComm · 2018
    Article
  12. Review
  13. Article
  14. Review
  15. Genome editing in cardiovascular diseases.Nature reviews. Cardiology · 2017
    Review
  16. Genetics and Genomics of Coronary Artery Disease.Current cardiology reports · 2016
    Review
  17. Review
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Marek M NagiecTherapeutics Platform, Center for the Science of Therapeutics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Adam P SkepnerTherapeutics Platform, Center for the Science of Therapeutics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Joseph NegriTherapeutics Platform, Center for the Science of Therapeutics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Michelle EichhornTherapeutics Platform, Center for the Science of Therapeutics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Nicolas KuperwasserDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, Massachusetts, United States of America.
Eamon ComerTherapeutics Platform, Center for the Science of Therapeutics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Giovanni MuncipintoTherapeutics Platform, Center for the Science of Therapeutics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Aravind SubramanianCancer Program, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Clary ClishMetabolite Profiling Platform, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Kiran MusunuruDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, Massachusetts, United States of America.
Jeremy R DuvallTherapeutics Platform, Center for the Science of Therapeutics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Michael FoleyTherapeutics Platform, Center for the Science of Therapeutics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Jose R PerezTherapeutics Platform, Center for the Science of Therapeutics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Michelle A J PalmerTherapeutics Platform, Center for the Science of Therapeutics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Broad Institute · USHarvard University · US

Funding

Genetic and functional analyses of a novel locus associated with LDL-C and MIR00HL098364 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI MUSUNURU, KIRAN · 2012 to 2014
$730k
Genetic and functional analyses of a novel locus associated with LDL-C and MIK99HL098364 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI MUSUNURU, KIRAN · 2010 to 2011
$275k
NHLBI NIH HHS R00 HL098364NHLBI NIH HHS R00-HL098364
6 · The paper itself

Abstract

Recent genome wide association studies have linked tribbles pseudokinase 1 (TRIB1) to the risk of coronary artery disease (CAD). Based on the observations that increased expression of TRIB1 reduces secretion of VLDL and is associated with lower plasma levels of LDL cholesterol and triglycerides, higher plasma levels of HDL cholesterol and reduced risk for myocardial infarction, we carried out a high throughput phenotypic screen based on quantitative RT-PCR assay to identify compounds that induce TRIB1 expression in human HepG2 hepatoma cells. In a screen of a collection of diversity-oriented synthesis (DOS)-derived compounds, we identified a series of benzofuran-based compounds that upregulate TRIB1 expression and phenocopy the effects of TRIB1 cDNA overexpression, as they inhibit triglyceride synthesis and apoB secretion in cells. In addition, the compounds downregulate expression of MTTP and APOC3, key components of the lipoprotein assembly pathway. However, CRISPR-Cas9 induced chromosomal disruption of the TRIB1 locus in HepG2 cells, while confirming its regulatory role in lipoprotein metabolism, demonstrated that the effects of benzofurans persist in TRIB1-null cells indicating that TRIB1 is sufficient but not necessary to transmit the effects of the drug. Remarkably, active benzofurans, as well as natural products capable of TRIB1 upregulation, also modulate hepatic cell cholesterol metabolism by elevating the expression of LDLR transcript and LDL receptor protein, while reducing the levels of PCSK9 transcript and secreted PCSK9 protein and stimulating LDL uptake. The effects of benzofurans are not masked by cholesterol depletion and are independent of the SREBP-2 regulatory circuit, indicating that these compounds represent a novel class of chemically tractable small-molecule modulators that shift cellular lipoprotein metabolism in HepG2 cells from lipogenesis to scavenging.

Indexed as

Cluster AnalysisGene Expression ProfilingGene Expression RegulationHepatocytesHep G2 CellsHigh-Throughput Screening AssaysHumansIntracellular Signaling Peptides and ProteinsLipid MetabolismLipoproteinsLipoproteins, LDLMitogen-Activated Protein KinasesOncostatin MProtein Serine-Threonine KinasesSmall Molecule LibrariesIntracellular Signaling Peptides and ProteinsLipoproteinsLipoproteins, LDLMitogen-Activated Protein KinasesOncostatin MProtein Serine-Threonine KinasesSmall Molecule LibrariesTRIB1 protein, human

Identifiers

PMID25811180
PMCPMC4374785
OpenAlexW2110803384

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.