Evidence map›Paper›PMID 25810482›Full record

ArticleJournal of neurophysiology2015

Brain-wide analysis of electrophysiological diversity yields novel categorization of mammalian neuron types.

Shreejoy J Tripathy, Shawn D Burton, Matthew Geramita, Richard C Gerkin, Nathaniel N Urban

Abstract read
In one paragraph

Article in Journal of neurophysiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Enhanced long-term potentiation in the anterior cingulate cortex of tree shrew.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
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  8. Neural heterogeneity controls computations in spiking neural networks.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  9. Article
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  12. Neurophysiological signatures of cortical micro-architecture.bioRxiv : the preprint server for biology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Shreejoy J TripathyCenter for the Neural Basis of Cognition, Carnegie Mellon University, Pittsburgh, Pennsylvania; Program in Neural Computation, Carnegie Mellon University, Pittsburgh, Pennsylvania;ORCID http://orcid.org/0000-0002-1007-9061
Shawn D BurtonCenter for the Neural Basis of Cognition, Carnegie Mellon University, Pittsburgh, Pennsylvania; Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania;
Matthew GeramitaCenter for the Neural Basis of Cognition, Carnegie Mellon University, Pittsburgh, Pennsylvania; Department of Neuroscience, University of Pittsburgh, Pittsburgh, Pennsylvania; and.
Richard C GerkinCenter for the Neural Basis of Cognition, Carnegie Mellon University, Pittsburgh, Pennsylvania; Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania; School of Life Sciences, Arizona State University, Tempe, Arizona.ORCID http://orcid.org/0000-0002-2940-3378
Nathaniel N UrbanCenter for the Neural Basis of Cognition, Carnegie Mellon University, Pittsburgh, Pennsylvania; Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania; Department of Neuroscience, University of Pittsburgh, Pittsburgh, Pennsylvania; and nurban@cmu.edu.

Funding

Interdiscplinary Training in Computational NeuroscienceR90DA023426 · NIDA · CARNEGIE-MELLON UNIVERSITY · PI KASS, ROBERT E, RUBIN, JONATHAN E. · 2006 to 2020
$4.5M
Intraglomerular Lateral Inhibition in the Olfactory BulbR01DC005798 · NIDCD · CARNEGIE-MELLON UNIVERSITY · PI URBAN, NATHAN NEAL · 2002 to 2012
$2.9M
INTERDISCIPLINARY TRAINING IN COMPUTATIONAL NEUROSCIENCET90DA022762 · NIDA · CARNEGIE-MELLON UNIVERSITY · PI KASS, ROBERT E, RUBIN, JONATHAN E. · 2006 to 2020
$2.0M
Tools for Model Discovery, Validation and Selection in Neuroscience with NeuroMLR01MH106674 · NIMH · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI CROOK, SHARON MARIE · 2015 to 2018
$1.6M
NeuroML: Standards and Tools for Multiscale Model Specification and ExchangeR01MH081905 · NIMH · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI CROOK, SHARON MARIE · 2009 to 2011
$891k
TEMPORAL PRECISION AND DYNAMICAL CODING IN THE OLFACTORY BULBF32DC010535 · NIDCD · CARNEGIE-MELLON UNIVERSITY · PI GERKIN, RICHARD C · 2010 to 2012
$159k
SPATIAL AND TEMPORAL PROPERTIES OF GRANULE CELL RECRUITMENT IN THE MAMMALIAN OLFACTORY BULBF31DC013490 · NIDCD · CARNEGIE-MELLON UNIVERSITY · PI BURTON, SHAWN DENVER · 2013 to 2015
$128k
NIDA NIH HHS R90 DA023426NIDA NIH HHS T90 DA022762NIDCD NIH HHS F31 DC013490NIDCD NIH HHS F31-DC-013490NIDCD NIH HHS F32-DC-010535NIDCD NIH HHS R01 DC005798NIDCD NIH HHS R01-DC-005798NIMH NIH HHS 01-MH-081905NIMH NIH HHS R01 MH081905NIMH NIH HHS R01 MH106674
6 · The paper itself

Abstract

For decades, neurophysiologists have characterized the biophysical properties of a rich diversity of neuron types. However, identifying common features and computational roles shared across neuron types is made more difficult by inconsistent conventions for collecting and reporting biophysical data. Here, we leverage NeuroElectro, a literature-based database of electrophysiological properties (www.neuroelectro.org), to better understand neuronal diversity, both within and across neuron types, and the confounding influences of methodological variability. We show that experimental conditions (e.g., electrode types, recording temperatures, or animal age) can explain a substantial degree of the literature-reported biophysical variability observed within a neuron type. Critically, accounting for experimental metadata enables massive cross-study data normalization and reveals that electrophysiological data are far more reproducible across laboratories than previously appreciated. Using this normalized dataset, we find that neuron types throughout the brain cluster by biophysical properties into six to nine superclasses. These classes include intuitive clusters, such as fast-spiking basket cells, as well as previously unrecognized clusters, including a novel class of cortical and olfactory bulb interneurons that exhibit persistent activity at theta-band frequencies.

Indexed as

Models, NeurologicalAnimalsAnimals, NewbornBiophysicsBrainCluster AnalysisDatasets as TopicHumansIn Vitro TechniquesLinear ModelsLuminescent ProteinsMembrane PotentialsMiceMice, TransgenicNeuronsPatch-Clamp TechniquesLuminescent Proteinsdatabaseselectrophysiologyintrinsic membrane propertiesneuroinformaticsneuron biophysicsneuron diversitytext mining

Identifiers

PMID25810482
PMCPMC4455486

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.