Evidence map›Paper›PMID 25810138›Full record

ArticleMicrobiologyOpen2015

Comparative impact of diverse regulatory loci on Staphylococcus aureus biofilm formation.

Danielle N Atwood, Allister J Loughran, Ashleah P Courtney, Allison C Anthony, Daniel G Meeker, Horace J Spencer, Ravi Kr Gupta, Chia Y Lee, Karen E Beenken, Mark S Smeltzer

Open access · goldAbstract read
In one paragraph

Article in MicrobiologyOpen, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 54 citations in OpenAlex.

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  6. Pathogens (Basel, Switzerland) · 2024
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  11. A Review of Biofilm Formation ofAntibiotics (Basel, Switzerland) · 2022
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  14. Biofilm and Small Colony Variants-An Update onInternational journal of molecular sciences · 2022
    Review
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Danielle N AtwoodDepartment of Microbiology and Immunology, University of Arkansas for Medical Sciences, Little Rock, Arkansas.
Allister J LoughranDepartment of Microbiology and Immunology, University of Arkansas for Medical Sciences, Little Rock, Arkansas.
Ashleah P CourtneyDepartment of Microbiology and Immunology, University of Arkansas for Medical Sciences, Little Rock, Arkansas.
Allison C AnthonyDepartment of Microbiology and Immunology, University of Arkansas for Medical Sciences, Little Rock, Arkansas.
Daniel G MeekerDepartment of Microbiology and Immunology, University of Arkansas for Medical Sciences, Little Rock, Arkansas.
Horace J SpencerDepartment of Biostatistics, University of Arkansas for Medical Sciences, Little Rock, Arkansas.
Ravi Kr GuptaDepartment of Microbiology and Immunology, University of Arkansas for Medical Sciences, Little Rock, Arkansas.
Chia Y LeeDepartment of Microbiology and Immunology, University of Arkansas for Medical Sciences, Little Rock, Arkansas.
Karen E BeenkenDepartment of Microbiology and Immunology, University of Arkansas for Medical Sciences, Little Rock, Arkansas.
Mark S SmeltzerDepartment of Microbiology and Immunology, University of Arkansas for Medical Sciences, Little Rock, Arkansas.
University of Arkansas for Medical Sciences · US

Funding

Study of the Cell-specific Inflammasome Responses During Defense Against Gram-negative BacteriaP20GM103625 · NIGMS · UNIV OF ARKANSAS FOR MED SCIS · PI SMELTZER, MARK S · 2012 to 2021
$21.5M
Arkansas Center for Clinical and Translational ResearchUL1TR000039 · NCATS · UNIV OF ARKANSAS FOR MED SCIS · PI BECK, CORNELIA MARIE, JAMES, LAURA P · 2012 to 2014
$10.0M
Center for Protein Structure and FunctionP30GM103450 · NIGMS · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI MILLETT, FRANCIS S · 2012 to 2014
$3.2M
TYPE 8 CAPSULE OF STAPHYLOCOCCUS AUREUSR01AI037027 · NIAID · UNIV OF ARKANSAS FOR MED SCIS · PI LEE, CHIA Y. · 1995 to 2013
$3.2M
Virulence gene regulation in Staphylococcus aureusR01AI113766 · NIAID · UNIV OF ARKANSAS FOR MED SCIS · PI LEE, CHIA Y. · 2015 to 2019
$1.7M
Regulation of biofilm formation in clinical isolates of Staphylococcus aureusR01AI074935 · NIAID · UNIV OF ARKANSAS FOR MED SCIS · PI SMELTZER, MARK S · 2007 to 2011
$1.6M
Regulation of biofilm formation in clinical isolates of Staphylococcus aureusR56AI074935 · NIAID · UNIV OF ARKANSAS FOR MED SCIS · PI SMELTZER, MARK S · 2013 to 2013
$341k
NCATS NIH HHS UL1 TR000039NCATS NIH HHS UL1TR000039NIAID NIH HHS R01 AI037027NIAID NIH HHS R01 AI074935NIAID NIH HHS R01 AI113766NIAID NIH HHS R56 AI074935NIAID NIH HHS R56-AI074935NIGMS NIH HHS P20-GM103450NIGMS NIH HHS P20 GM103625NIGMS NIH HHS P30 GM103450
6 · The paper itself

Abstract

The relative impact of 23 mutations on biofilm formation was evaluated in the USA300, methicillin-resistant strain LAC. Mutation of sarA, atl, codY, rsbU, and sigB limited biofilm formation in comparison to the parent strain, but the limitation imposed by mutation of sarA was greater than that imposed by mutation of any of these other genes. The reduced biofilm formation of all mutants other than the atl mutant was correlated with increased levels of extracellular proteases. Mutation of fur- and mgrA-enhanced biofilm formation but in LAC had no impact on protease activity, nuclease activity, or accumulation of the polysaccharide intercellular adhesin (PIA). The increased capacity of these mutants to form a biofilm was reversed by mutation of sarA, and this was correlated with increased protease production. Mutation of sarA, mgrA, and sigB had the same phenotypic effect in the methicillin-sensitive strain UAMS-1, but mutation of codY increased rather than decreased biofilm formation. As with the UAMS-1 mgrA mutant, this was correlated with increased production of PIA. Examination of four additional clinical isolates suggests that the differential impact of codY on biofilm formation may be a conserved characteristic of methicillin-resistant versus methicillin-sensitive strains.

Indexed as

BiofilmsGene Expression Regulation, BacterialGenetic LociDeoxyribonucleasesExtracellular SpaceMutationPeptide HydrolasesPhenotypeRegulatory Sequences, Nucleic AcidStaphylococcus aureusDeoxyribonucleasesPeptide HydrolasesBiofilmproteaseregulationsarAStaphylococcus aureus

Identifiers

PMID25810138
PMCPMC4475386
OpenAlexW2094450113

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.