Evidence map›Paper›PMID 25810090›Full record

ArticleGenesis (New York, N.Y. : 2000)

prdm1a functions upstream of itga5 in zebrafish craniofacial development.

Kristi LaMonica, Hai-lei Ding, Kristin Bruk Artinger

Abstract read
In one paragraph

Article in Genesis (New York, N.Y. : 2000). The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. A vertebrate adaptive radiation is assembled from an ancient and disjunct spatiotemporal landscape.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Kristi LaMonicaDepartment of Craniofacial Biology, School of Dental Medicine, University of Colorado, Aurora, Colrado.
Hai-lei Ding
Kristin Bruk Artinger
University of Colorado Denver · USUniversity of Colorado Anschutz Medical Campus · US

Funding

ZEBRAFISH TRANSGENIC CORE - ROCKY MOUNTAIN NEUROLOGICAL DISORDERS CORE CENTERP30NS048154 · NINDS · UNIVERSITY OF COLORADO DENVER · PI RIBERA, ANGELES BADELL · 2004 to 2020
$10.1M
THE ROLE OF prdm1 IN BRANCHIAL ARCH DEVELOPMENTR01DE017699 · NIDCR · UNIVERSITY OF COLORADO DENVER · PI ARTINGER, KRISTIN · 2007 to 2011
$1.8M
Building a Gene Regulatory Network for prdm1a During Zebrafish Craniofacial DevelF32DE021920 · NIDCR · UNIVERSITY OF COLORADO DENVER · PI LAMONICA, KRISTI A · 2011 to 2013
$159k
NIDCR NIH HHS F32 DE021920NIDCR NIH HHS F32DE021920NIDCR NIH HHS R01 DE017699NIDCR NIH HHS R01DE017699NINDS NIH HHS P30 NS048154NINDS NIH HHS P30NS048154
6 · The paper itself

Abstract

Cranial neural crest cells are specified and migrate into the pharyngeal arches where they subsequently interact with the surrounding environment. Signaling and transcription factors, such as prdm1a regulate this interaction, but it remains unclear which specific factors are required for posterior pharyngeal arch development. Previous analysis suggests that prdm1a is required for posterior ceratobranchial cartilages in zebrafish and microarray analysis between wildtype and prdm1a mutants at 25 h post fertilization demonstrated that integrin α5 (itga5) is differentially expressed in prdm1a mutants. Here, we further investigate the interaction between prdm1a and itga5 in zebrafish craniofacial development. In situ hybridization for itga5 demonstrates that expression of itga5 is decreased in prdm1a mutants between 18 and 31 h post fertilization and itga5 expression overlaps with prdm1a in the posterior arches, suggesting a temporal window for interaction. Double mutants for prdm1a;itga5 have an additive viscerocranium phenotype more similar to prdm1a mutants, suggesting that prdm1a acts upstream of itga5. Consistent with this, loss of posterior pharyngeal arch expression of dlx2a, ceratobranchial cartilages 2-5, and cell proliferation in prdm1a mutants can be rescued with itga5 mRNA injection. Taken together, these data suggest that prdm1a acts upstream of itga5 and are both necessary for posterior pharyngeal arch development in zebrafish.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsAnimals, Genetically ModifiedDNA-Binding ProteinsEmbryo, NonmammalianFaceIn Situ HybridizationIntegrin alpha5MutationNuclear ProteinsPositive Regulatory Domain I-Binding Factor 1Real-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionRNA, MessengerSignal TransductionSkullDNA-Binding ProteinsIntegrin alpha5Nuclear ProteinsPositive Regulatory Domain I-Binding Factor 1prdm1a protein, zebrafishRNA, MessengerZebrafish Proteinsceratobranchialsneural crestpharyngeal arches

Identifiers

PMID25810090
PMCPMC4411201
OpenAlexW2167908387

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.