Evidence map›Paper›PMID 25809939›Full record

ArticleJournal of human genetics2015

A novel mutation in the promoter of RARS2 causes pontocerebellar hypoplasia in two siblings.

Zejuan Li, Rhonda Schonberg, Lucia Guidugli, Amy Knight Johnson, Stephen Arnovitz, Sandra Yang, Joseph Scafidi, Marshall L Summar, Gilbert Vezina, Soma Das and 2 more

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in Journal of human genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
7.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 33 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Zejuan LiDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.
Rhonda Schonberg1] Division of Genetics and Metabolism, Children's National Health System, Washington, DC, USA [2] The George Washington University Medical Center, Washington, DC, USA.
Lucia GuidugliDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.
Amy Knight JohnsonDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.
Stephen ArnovitzSection of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, IL, USA.
Sandra YangDivision of Genetics and Metabolism, Children's National Health System, Washington, DC, USA.
Joseph Scafidi1] The George Washington University Medical Center, Washington, DC, USA [2] Division of Neurology, Children's National Health System, Washington, DC, USA.
Marshall L Summar1] Division of Genetics and Metabolism, Children's National Health System, Washington, DC, USA [2] The George Washington University Medical Center, Washington, DC, USA.
Gilbert Vezina1] The George Washington University Medical Center, Washington, DC, USA [2] Department of Radiology, Children's National Health System, Washington, DC, USA.
Soma DasDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.
Kimberly Chapman1] Division of Genetics and Metabolism, Children's National Health System, Washington, DC, USA [2] The George Washington University Medical Center, Washington, DC, USA.
Daniela del GaudioDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.
University of Chicago · USChildren's National · USWashington University Medical Center · US

Funding

Lost anaplerosis in Propionic acidemia and Methylmalonic aciduria?K08DK105233 · NIDDK · CHILDREN'S RESEARCH INSTITUTE · PI CHAPMAN, KIMBERLY ANN · 2015 to 2017
$441k
NIDDK NIH HHS K08 DK105233
6 · The paper itself

Abstract

Pontocerebellar hypoplasia (PCH) is characterized by hypoplasia and atrophy of the cerebellum, variable pontine atrophy, microcephaly, severe mental and motor impairments and seizures. Mutations in 11 genes have been reported in 8 out of 10 forms of PCH. Recessive mutations in the mitochondrial arginyl-transfer RNA synthetase gene (RARS2) have been recently associated with PCH type 6, which is characterized by early-onset encephalopathy with signs of oxidative phosphorylation defect. Here we describe the clinical presentation, neuroimaging findings and molecular characterizations of two siblings with a clinical diagnosis of PCH who displayed a novel variant (c.-2A>G) in the 5'-UTR of the RARS2 gene in the homozygous state. This variant was identified through next-generation sequencing testing of a panel of nine genes known to be involved in PCH. Gene expression and functional studies demonstrated that the c.-2A>G sequence change directly leads to a reduced RARS2 messenger RNA expression in the patients by decreasing RARS2 promoter activity, thus providing evidence that mutations in the RARS2 promoter are likely to represent a new causal mechanism of PCH6.

Indexed as

Promoter Regions, GeneticArginine-tRNA LigaseBase SequenceCerebellar DiseasesChild, PreschoolDNA Mutational AnalysisFemaleGenetic Association StudiesHumansInfantMaleMolecular Sequence DataMutation, MissensePoint MutationArginine-tRNA LigaseRARS2 protein, human

Identifiers

PMID25809939
PMCPMC5537600
OpenAlexW1993706836

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.