Evidence map›Paper›PMID 25809264›Full record

ArticleBiophysical journal2015

Revisiting the interaction between the chaperone Skp and lipopolysaccharide.

Björn M Burmann, Daniel A Holdbrook, Morgane Callon, Peter J Bond, Sebastian Hiller

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Skp is a multivalent chaperone of outer-membrane proteins.Nature structural & molecular biology · 2016
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Björn M BurmannBiozentrum, University of Basel, Basel, Switzerland. Electronic address: bjoern.burmann@unibas.ch.
Daniel A HoldbrookBioinformatics Institute (A(∗)STAR), Singapore.
Morgane CallonBiozentrum, University of Basel, Basel, Switzerland.
Peter J BondBioinformatics Institute (A(∗)STAR), Singapore; Department of Biological Sciences, National University of Singapore, Singapore.
Sebastian HillerBiozentrum, University of Basel, Basel, Switzerland. Electronic address: sebastian.hiller@unibas.ch.
University of Basel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The bacterial outer membrane comprises two main classes of components, lipids and membrane proteins. These nonsoluble compounds are conveyed across the aqueous periplasm along specific molecular transport routes: the lipid lipopolysaccharide (LPS) is shuttled by the Lpt system, whereas outer membrane proteins (Omps) are transported by chaperones, including the periplasmic Skp. In this study, we revisit the specificity of the chaperone-lipid interaction of Skp and LPS. High-resolution NMR spectroscopy measurements indicate that LPS interacts with Skp nonspecifically, accompanied by destabilization of the Skp trimer and similar to denaturation by the nonnatural detergent lauryldimethylamine-N-oxide (LDAO). Bioinformatic analysis of amino acid conservation, structural analysis of LPS-binding proteins, and MD simulations further confirm the absence of a specific LPS binding site on Skp, making a biological relevance of the interaction unlikely. Instead, our analysis reveals a highly conserved salt-bridge network, which likely has a role for Skp function.

Indexed as

Amino Acid SequenceBinding SitesDetergentsDimethylaminesDNA-Binding ProteinsEscherichia coliEscherichia coli ProteinsLipopolysaccharidesMolecular ChaperonesMolecular Dynamics SimulationNuclear Magnetic Resonance, BiomolecularProtein ConformationProtein DenaturationProtein MultimerizationDetergentsDimethylaminesDNA-Binding Proteinsdodecyldimethylamine oxideEscherichia coli ProteinsLipopolysaccharidesMolecular ChaperonesSkp protein, E coli

Identifiers

PMID25809264
PMCPMC4375563
OpenAlexW2038940767

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.