Evidence map›Paper›PMID 25809250›Full record

ArticleBiophysical journal2015

A systematic comparison of mathematical models for inherent measurement of ciliary length: how a cell can measure length and volume.

William B Ludington, Hiroaki Ishikawa, Yevgeniy V Serebrenik, Alex Ritter, Rogelio A Hernandez-Lopez, Julia Gunzenhauser, Elisa Kannegaard, Wallace F Marshall

Abstract readComparative Study
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. A self-organizing single-cell morphology circuit optimizesbioRxiv : the preprint server for biology · 2025
    Article
  3. Review
  4. Article
  5. Frontiers in cell and developmental biology · 2024
    Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. The short flagella 1 (SHF1) gene inMolecular biology of the cell · 2022
    Article
  12. Article
  13. Article
  14. Scaling of Subcellular Structures.Annual review of cell and developmental biology · 2020
    Review
  15. Article
  16. Article
  17. Article
  18. Testing the role of intraflagellar transport in flagellar length control using length-altering mutants ofPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

William B LudingtonDepartment of Biophysics and Biochemistry, University of California, San Francisco, San Francisco, California.
Hiroaki IshikawaDepartment of Biophysics and Biochemistry, University of California, San Francisco, San Francisco, California.
Yevgeniy V SerebrenikDepartment of Biophysics and Biochemistry, University of California, San Francisco, San Francisco, California.
Alex RitterPhysiology Course, Marine Biological Laboratory, Woods Hole, Massachusetts.
Rogelio A Hernandez-LopezPhysiology Course, Marine Biological Laboratory, Woods Hole, Massachusetts.
Julia GunzenhauserPhysiology Course, Marine Biological Laboratory, Woods Hole, Massachusetts.
Elisa KannegaardDepartment of Biophysics and Biochemistry, University of California, San Francisco, San Francisco, California.
Wallace F MarshallDepartment of Biophysics and Biochemistry, University of California, San Francisco, San Francisco, California. Electronic address: wmarshall@biochem.ucsf.edu.

Funding

Rewiring Therapeutic Cells: User-Controlled T Cells and Stem CellsP50GM081879 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIM, WENDELL A · 2010 to 2017
$19.0M
Modeling and Analysis of the Flagellar Length Control SystemR01GM097017 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MARSHALL, WALLACE · 2011 to 2018
$2.1M
Physiology: Modern Cell Biology Using Microscopic, Biochemical and Computational ApproachesR13GM085967 · NIGMS · MARINE BIOLOGICAL LABORATORY · PI FLETCHER, DANIEL A, HYMAN, LINDA E · 2008 to 2019
$1.7M
NIGMS NIH HHS R01 GM097017NIGMS NIH HHS R13 GM085967
6 · The paper itself

Abstract

Cells control organelle size with great precision and accuracy to maintain optimal physiology, but the mechanisms by which they do so are largely unknown. Cilia and flagella are simple organelles in which a single measurement, length, can represent size. Maintenance of flagellar length requires an active transport process known as intraflagellar transport, and previous measurements suggest that a length-dependent feedback regulates intraflagellar transport. But the question remains: how is a length-dependent signal produced to regulate intraflagellar transport appropriately? Several conceptual models have been suggested, but testing these models quantitatively requires that they be cast in mathematical form. Here, we derive a set of mathematical models that represent the main broad classes of hypothetical size-control mechanisms currently under consideration. We use these models to predict the relation between length and intraflagellar transport, and then compare the predicted relations for each model with experimental data. We find that three models-an initial bolus formation model, an ion current model, and a diffusion-based model-show particularly good agreement with available experimental data. The initial bolus and ion current models give mathematically equivalent predictions for length control, but fluorescence recovery after photobleaching experiments rule out the initial bolus model, suggesting that either the ion current model or a diffusion-based model is more likely correct. The general biophysical principles of the ion current and diffusion-based models presented here to measure cilia and flagellar length can be generalized to measure any membrane-bound organelle volume, such as the nucleus and endoplasmic reticulum.

Indexed as

CiliaModels, BiologicalChlamydomonasDiffusionFlagellaFluorescence Recovery After PhotobleachingGreen Fluorescent ProteinsIonsMicroscopy, FluorescenceMovementOrganelle SizeSpecies SpecificityGreen Fluorescent ProteinsIons

Identifiers

PMID25809250
PMCPMC4375445

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.